Role of Ligand Binding in Structural Organization ofAddA-riboswitch Aptamer: A Molecular Dynamics Simulation

High-Throughput Integrated Analyses for the Tyrosinase-Induced Melanogenesis: Microarray, Proteomics and Interactomics Studies

(2012) Zhi-Rong Lü et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Conformational Analysis of Genotoxic Benzo[a]pyrene-7,8-dione-Duplex DNA Adducts Using a Molecular Dynamics Method (II)

(2012) Hyun Mee Lee et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Influence of the Acetylcholinesterase Active Site Protonation on Omega Loop and Active Site Dynamics

(2012) Jiří Wiesner et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Exposure of Hydrophobic Core in Human Prion Protein Pathogenic Mutant H187R

(2012) Linghao Zhong   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

RNA Stability Under Different Combinations of Amber Force Fields and Solvation Models

(2012) Zhou Gong et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Improvements of the Hierarchical Approach for Predicting RNA Tertiary Structure

(2012) Yunjie Zhao et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Novel Ligands for a Purine Riboswitch Discovered by RNA-Ligand Docking

(2011) Peter Daldrop et al.   CHEMISTRY & BIOLOGY

Physics-Based De Novo Prediction of RNA 3D Structures

(2011) Song Cao et al.   JOURNAL OF PHYSICAL CHEMISTRY B

New insights into riboswitch regulation mechanisms

(2011) Laurène Bastet et al.   MOLECULAR MICROBIOLOGY

Multivector Fluorescence Analysis of thexptGuanine Riboswitch Aptamer Domain and the Conformational Role of Guanine

(2010) Michael D. Brenner et al.   BIOCHEMISTRY

Heterogeneity and Dynamics of the Ligand Recognition Mode in Purine-Sensing Riboswitches

(2010) Niyati Jain et al.   BIOCHEMISTRY

United-Residue (UNRES) Langevin Dynamics Simulations of trpzip2 Folding

(2010) Yi He et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

A switch in time: Detailing the life of a riboswitch

(2009) Andrew D. Garst et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Foldable subunits of helix protein

(2009) Yi He et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

The long and the short of riboswitches

(2009) Alexander Serganov   CURRENT OPINION IN STRUCTURAL BIOLOGY

Folding Mechanism of Beta-Hairpin Trpzip2: Heterogeneity, Transition State and Folding Pathways

(2009) Yi Xiao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Role of the Adenine Ligand on the Stabilization of the Secondary and Tertiary Interactions in the Adenine Riboswitch

(2009) U. Deva Priyakumar et al.   JOURNAL OF MOLECULAR BIOLOGY

Theoretical studies on the interaction of modified pyrimidines and purines with purine riboswitch

(2009) Baoping Ling et al.   JOURNAL OF MOLECULAR GRAPHICS & MODELLING

Riboswitch structure: an internal residue mimicking the purine ligand

(2009) Vanessa Delfosse et al.   NUCLEIC ACIDS RESEARCH

Molecular dynamics simulation study of the binding of purine bases to the aptamer domain of the guanine sensing riboswitch

(2009) A. Villa et al.   NUCLEIC ACIDS RESEARCH

MD simulations of ligand-bound and ligand-free aptamer: Molecular level insights into the binding and switching mechanism of the add A-riboswitch

(2009) M. Sharma et al.   RNA

RNA Folding: Conformational Statistics, Folding Kinetics, and Ion Electrostatics

(2008) Shi-Jie Chen   Annual Review of Biophysics

Observation of multiple folding pathways of  -hairpin trpzip2 from independent continuous folding trajectories

(2008) C. Chen et al.   BIOINFORMATICS

Crystal Structure of the Lysine Riboswitch Regulatory mRNA Element

(2008) Andrew D. Garst et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Relative Stability of Helices Determines the Folding Landscape of Adenine Riboswitch Aptamers

(2008) Jong-Chin Lin et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Ligand-dependent folding of the three-way junction in the purine riboswitch

(2008) C. D Stoddard et al.   RNA

Direct Observation of Hierarchical Folding in Single Riboswitch Aptamers

(2008) W. J. Greenleaf et al.   SCIENCE