Structure-based Analysis of DNA Sequence Patterns Guiding Nucleosome Positioningin vitro

Sequence Structure of Hidden 10.4-base Repeat in the Nucleosomes ofC. elegans

(2012) F. Salih et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Epigenetic Nucleosomes: Alu Sequences and CG as Nucleosome Positioning Element

(2012) F. Salih et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Nucleosome DNA Bendability Matrix(C. elegans)

(2012) I. Gabdank et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Sequence-dependent Kink-and-Slide Deformations of Nucleosomal DNA Facilitated by Histone Arginines Bound in the Minor Groove

(2012) Difei Wang et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

DNA Sequence-Directed Organization of Chromatin: Structure-Based Computational Analysis of Nucleosome-Binding Sequences

(2009) Sreekala Balasubramanian et al.   BIOPHYSICAL JOURNAL

High-Resolution Mapping of Sequence-Directed Nucleosome Positioning on Genomic DNA

(2009) Ross M. Fraser et al.   JOURNAL OF MOLECULAR BIOLOGY

The role of DNA shape in protein–DNA recognition

(2009) Remo Rohs et al.   NATURE

Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II

(2009) Olga I Kulaeva et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

High-resolution dynamic mapping of histone-DNA interactions in a nucleosome

(2009) Michael A Hall et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo

(2009) Yong Zhang et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Distinctive sequence patterns in metazoan and yeast nucleosomes: Implications for linker histone binding to AT-rich and methylated DNA

(2009) Feng Cui et al.   NUCLEIC ACIDS RESEARCH

Using DNA mechanics to predict in vitro nucleosome positions and formation energies

(2009) Alexandre V. Morozov et al.   NUCLEIC ACIDS RESEARCH

A translational signature for nucleosome positioning in vivo

(2009) Micaela Caserta et al.   NUCLEIC ACIDS RESEARCH

nuScore: a web-interface for nucleosome positioning predictions

(2008) M. Y. Tolstorukov et al.   BIOINFORMATICS

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

(2008) T. N. Mavrich et al.   GENOME RESEARCH

Sequence-dependent Nucleosome Positioning

(2008) Ho-Ryun Chung et al.   JOURNAL OF MOLECULAR BIOLOGY

Nucleosome organization in the Drosophila genome

(2008) Travis N. Mavrich et al.   NATURE

The DNA-encoded nucleosome organization of a eukaryotic genome

(2008) Noam Kaplan et al.   NATURE