期刊
JOURNAL OF BIOMEDICAL INFORMATICS
卷 41, 期 5, 页码 730-738出版社
ACADEMIC PRESS INC ELSEVIER SCIENCE
DOI: 10.1016/j.jbi.2008.05.014
关键词
LSID; Metadata; RDF; Resolution; Export schema; View; Trigger; Biology; Systematics
资金
- National Science Foundation [IIS-0531767]
Life science identifier (LSID) is a global unique identifier standard intended to help rationalize the unique archival requirements of biological data. We describe LSID implementation architecture such that data managed by a relational database management system may be integrated with the LSID protocol as an add-on layer. The approach requires a database administrator (DBA) to specify an export schema detailing the content and structure of the archived data, and a mapping of the existing database to that schema. This specification can be expressed using SQL view syntax. in effect, we define a SQL-like language for implementing LSIDs. We describe the mapping of the view definition to an implementation as a set of databases triggers and a fixed runtime library. Thus a compiler for a domain-specific language could be written that would reduce the implementation of LSIDs to the task of writing SQL view-like definitions. (C) 2008 Elsevier Inc. All rights reserved.
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