Article
Multidisciplinary Sciences
Donghong Ju, Li Li, Youming Xie
Summary: Ribosomal proteins are regulated by cotranslational protein degradation, which does not require prior ubiquitylation. Cotranslational folding efficiency and expression level are critical factors determining cotranslational protein degradation of ribosomal proteins.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2023)
Article
Biochemistry & Molecular Biology
S. Zachary Swartz, Tzer Han Tan, Margherita Perillo, Nikta Fakhri, Gary M. Wessel, Athula H. Wikramanayake, Iain M. Cheeseman
Summary: In meiotic oocytes of the sea star Patifia miniata, the distribution dynamics of the Disheveled protein are regulated by meiotic cell cycle progression and influenced by association with Lamp1+ endosomes and pre-localized Frizzled receptors within the oocyte cortex.
Article
Multidisciplinary Sciences
Shuangyi Cai, Thomas Hu, Mythreye Venkatesan, Mayar Allam, Frank Schneider, Suresh S. Ramalingam, Shi-Yong Sun, Ahmet F. Coskun
Summary: Protein-protein interaction networks are altered in multi-gene dysregulations in many disorders. Image-based protein multiplexing sheds light on signaling pathways to dissect cell-to-cell heterogeneity, previously masked by the bulk assays. RapMIF is a rapid multiplexed immunofluorescence method that can measure the spatial protein maps of up to 25 proteins, providing combinatorial signaling states and enabling precision therapy design.
Editorial Material
Biochemistry & Molecular Biology
Charles A. Ettensohn
Summary: The establishment of early polarity in animal embryos is influenced by the dynamic redistribution of the Wnt signaling effector Dishevelled, a process regulated by the cell cycle and the Wnt receptor Frizzled 1.
Article
Biochemistry & Molecular Biology
Jeeyoon Chang, Min-Kyung Shin, Joori Park, Hyun Jung Hwang, Nicolas Locker, Junhak Ahn, Doyeon Kim, Daehyun Baek, Yeonkyoung Park, Yujin Lee, Sung Ho Boo, Hyeong-In Kim, Yoon Ki Kim
Summary: The direct interaction between eIF4A3 and eIF3g plays a key role in the internal translation initiation of circRNAs, expanding our understanding of the protein-coding potential of the human transcriptome.
NUCLEIC ACIDS RESEARCH
(2023)
Article
Cell & Tissue Engineering
Xiaowen Wu, Xiaochen Wang, Liying Shan, Jie Zhou, Xin Zhang, Endong Zhu, Hairui Yuan, Baoli Wang
Summary: The loss of NFIX gene affects endochondral ossification and mineralization in bone, with NFIX inducing osteoblast differentiation and impairing adipocyte formation by regulating HMGA1 expression. HMGA1 plays a role in osteoblast commitment and mediates NFIX function by activating canonical Wnt signaling pathways.
Article
Clinical Neurology
Ganglan Fu, Shibin Du, Tianfeng Huang, Minghui Cao, Xiaozhou Feng, Shaogen Wu, Sfian Albik, Alex Bekker, Yuan-Xiang Tao
Summary: The study revealed the involvement of FTO in hemorrhage-induced thalamic pain by stabilizing TLR4 upregulation in thalamic neurons, indicating FTO as a potential target for the treatment of this disorder.
Article
Oncology
Liang Zhang, Qin Liu, Ke-wei Liu, Zhong-yi Qin, Guang-xi Zhu, Li-ting Shen, Ni Zhang, Bi-ying Liu, Lin-rong Che, Jin-yang Li, Tao Wang, Liang-zhi Wen, Kai-jun Liu, Yan Guo, Xin-ru Yin, Xing-wei Wang, Zhi-hua Zhou, Hua-liang Xiao, You-hong Cui, Xiu-wu Bian, Chun-hui Lan, Dongfeng Chen, Bin Wang
Summary: SHARPIN interacts with beta-catenin to stabilize its protein, competing with the E3 ubiquitin ligase beta-Trcp1 to reduce beta-catenin ubiquitination levels and prevent its degradation. SHARPIN is essential for the invasiveness and malignant growth of gastric cancer cells, dependent on its binding partner beta-catenin. Elevated SHARPIN expression in gastric cancer tissues is associated with disease malignancy and correlates with beta-catenin expression levels.
Article
Chemistry, Multidisciplinary
Na Hui Kim, Minji Kwon, Jiwoo Jung, Hyo Byeong Chae, Jiwoo Lee, Yeo-Jun Yoon, In Seok Moon, Ho K. Lee, Wan Namkung, Konstantina M. Stankovic, Se A. Lee, Jong Dae Lee, Sin-Aye Park
Summary: In this study, researchers found that celastrol can inhibit the growth of vestibular schwannoma (VS) by promoting the degradation of beta-catenin through Wnt/beta-catenin signaling pathway. Celastrol showed potent inhibitory effect on the viability of VS cells and suppressed tumor growth without toxicity in mice.
ACTA PHARMACOLOGICA SINICA
(2022)
Article
Medicine, Research & Experimental
Shunshun Han, Can Cui, Xiyu Zhao, Yao Zhang, Yun Zhang, Jing Zhao, Xiaoxu Shen, Haorong He, Jianping Wang, Menggen Ma, Diyan Li, Qing Zhu, Huadong Yin
Summary: The study revealed that FilaminC (Flnc) plays a positive regulatory role in muscle development, with its absence inducing autophagy or mitophagy and regulating muscle atrophy.
MOLECULAR THERAPY-NUCLEIC ACIDS
(2022)
Article
Multidisciplinary Sciences
Johanna Pispa, Elisa Mikkonen, Leena Arpalahti, Congyu Jin, Carmen Martinez-Fernandez, Julian Ceron, Carina I. Holmberg
Summary: The study suggests that AKIR-1 is an important regulator of the subcellular localization and activity of proteasomes in multicellular organisms, playing a crucial role in maintaining protein homeostasis.
Article
Pathology
Natalie M. Rizzo, Lynette M. Sholl, Muhammad T. Idrees, John C. Cheville, Sounak Gupta, Kristine M. Cornejo, Hiroshi Miyamoto, Michelle S. Hirsch, Katrina Collins, Andres M. Acosta
Summary: This study compared the genomic landscape of aggressive and nonaggressive testicular Leydig cell tumors (LCTs) and found that aggressive LCTs are characterized by FH inactivation and multiple copy number changes, while nonaggressive LCTs do not exhibit these characteristics.
Article
Cell Biology
Domenico Conza, Paola Mirra, Gaetano Cali, Luigi Insabato, Francesca Fiory, Francesco Beguinot, Luca Ulianich
Summary: Research suggests that metformin exerts anti-tumorigenic effects by inhibiting endometrial cancer cell growth and survival through the modulation of specific branches of the Unfolded Protein Response and the Wnt/beta-catenin pathway, independently of AMPK.
Article
Biochemistry & Molecular Biology
Jing-Qiang Huang, Ling-Xin Duan, Qiu-Yu Liu, He-Feng Li, Ao-Ping Hu, Jun-Wei Song, Chuxuan Lin, Bingsheng Huang, Da Yao, Bin Peng, Yehong Sun, Yuxin Wen, Lin Yang, Xingzhi Xu, Li-Yun Gong
Summary: This study found that high expression of SRPK1 was significantly associated with poor progression-free survival (PFS) in patients with advanced non-small cell lung cancer (NSCLC) undergoing gefitinib treatment. SRPK1 reduced the ability of gefitinib to induce apoptosis in NSCLC cells independently of its kinase activity by increasing EGFR expression and promoting the accumulation and phosphorylation of membrane EGFR. The SRPK1/GSK3 beta axis activates the Wnt pathway and promotes gefitinib resistance in NSCLC.
Article
Medicine, Research & Experimental
Wenjing Yang, Beili Wang, Qian Yu, Te Liu, Tong Li, Tongtong Tian, Anli Jin, Lin Ding, Wei Chen, Hao Wang, Jingrong Xian, Baishen Pan, Jian Zhou, Jia Fan, Xinrong Yang, Wei Guo
Summary: This study suggests that ARHGAP24 may serve as an independent prognostic indicator for HCC, inhibiting cell proliferation and invasion. It exerts its suppressive function by attenuating beta-catenin transactivation and blocking beta-catenin signaling.
Article
Neurosciences
Malgorzata Wiweger, Lukasz Majewski, Dobrochna Adamek-Urbanska, Iga Wasilewska, Jacek Kuznicki
Summary: Niemann-Pick C (NPC) disease is a rare lysosomal storage disorder caused by mutations in NPC1 or NPC2 genes, leading to accumulation of cholesterol and sphingolipids in tissues. A zebrafish mutant lacking Npc2 protein was used to study NPC disease, revealing behavioral changes and genetic correlations that suggest it as a promising model for further research.
FRONTIERS IN CELLULAR NEUROSCIENCE
(2021)
Article
Neurosciences
Srinivas Parthasarathy, Swathi Srivatsa, A. Ioana Weber, Nikolaus Graber, Olga Britanova, Ekaterina Borisova, Paraskevi Bessa, Mateusz C. Ambrozkiewicz, Marta Rosario, Victor Tarabykin
Summary: The study reveals a novel function of the non-catalytic isoform TrkC-T1 in regulating the generation of different types of neurons by neural progenitor cells, by interacting with the signaling adaptor protein ShcA.
Article
Multidisciplinary Sciences
Ekaterina Epifanova, Valentina Salina, Denis Lajko, Kathrin Textoris-Taube, Thomas Naumann, Olga Bormuth, Ingo Bormuth, Stephen Horan, Theres Schaub, Ekaterina Borisova, Mateusz C. Ambrozkiewicz, Victor Tarabykin, Marta Rosario
Summary: Neuronal adhesion is regulated by Zeb2 to control the initiation and orientation of radial migration in the neocortex, involving pathways regulated by Neuropilin-1 and Caadherin-6. Neurons undergo an independent orientation process after migration is completed.
Article
Cell Biology
Rafal Platek, Piotr Rogujski, Jaroslaw Mazuryk, Marta B. Wisniewska, Leszek Kaczmarek, Artur Czupryn
Summary: In the adult brain, new neurons are derived from two neurogenic regions: the subventricular zone (SVZ) and the subgranular layer of the hippocampal dentate gyrus. This study found that the loss of Cyclin D2 gene reduces the proliferation of neural precursors and progenitors, leading to a decrease in the production of interneurons in the olfactory bulbs.
Article
Anatomy & Morphology
Nikola Brozko, Suelen Baggio, Marcin A. Lipiec, Marta Jankowska, Lukasz M. Szewczyk, Michael O. Gabriel, Chaitali Chakraborty, Jose L. Ferran, Marta B. Wisniewska
Summary: This study investigates the role of Wnt signaling in the development of the pretectum in zebrafish, revealing that Wnt signaling guides the regional distribution of GABAergic and glutamatergic neurons, enhancing our understanding of pretectal neurogenesis.
FRONTIERS IN NEUROANATOMY
(2022)
Article
Biochemistry & Molecular Biology
Ewelina Latoszek, Malgorzata Wiweger, Jan Ludwiczak, Stanislaw Dunin-Horkawicz, Jacek Kuznicki, Magdalena Czeredys
Summary: This study suggests that the dysregulation of SIP function contributes to the aggregation of mutated huntingtin protein (mHTT) in Huntington's disease (HD). SIP could be a potential target for early-stage therapy in HD.
CELL AND BIOSCIENCE
(2022)
Article
Chemistry, Medicinal
Adva Hadar, Irena Voinsky, Olga Parkhomenko, Monika Puzianowska-Kuznicka, Jacek Kuznicki, Illana Gozes, David Gurwitz
Summary: With increased life expectancies, cancer rates are rising among the elderly. However, some centenarians are able to reach exceptionally old age without experiencing cancer. This study found higher ATM mRNA expression in LCLs from female centenarians and lower hsa-miR-181a-5p levels targeting ATM. These findings suggest a potential role for ATM in protecting against age-related diseases.
DRUG DEVELOPMENT RESEARCH
(2022)
Article
Cell & Tissue Engineering
Ewelina Latoszek, Marta Piechota, Ewa Liszewska, Hana Hansikova, Jiri Klempir, Alzbeta Muhlback, Georg Bernhard Landwehrmeyer, Jacek Kuznicki, Magdalena Czeredys
Summary: Researchers generated hiPSC lines from dermal fibroblasts of patients with Huntington's disease, which can differentiate into three-germ layers in vitro, serving as an important tool for studying the disease.
STEM CELL RESEARCH
(2022)
Article
Multidisciplinary Sciences
Katarzyna Niescierowicz, Leszek Pryszcz, Cristina Navarrete, Eugeniusz Tralle, Agata Sulej, Karim Abu Nahia, Marta Elzbieta Kasprzyk, Katarzyna Misztal, Abhishek Pateria, Adrianna Pakula, Matthias Bochtler, Cecilia Winata
Summary: Adenosine deaminases (ADARs) play important roles in early zebrafish development, affecting antero-posterior and dorso-ventral patterning. Genome-wide editing discovery reveals widespread A-to-I editing in zebrafish transcripts, with multiple editing sites found in transcripts involved in embryonic patterning. Adar also regulates the innate immune response in zebrafish.
NATURE COMMUNICATIONS
(2022)
Article
Multidisciplinary Sciences
Mirunalini Ravichandran, Dominik Rafalski, Claudia I. Davies, Oscar Ortega-Recalde, Xinsheng Nan, Cassandra R. Glanfield, Annika Kotter, Katarzyna Misztal, Andrew H. Wang, Marek Wojciechowski, Michal Razew, Issam M. Mayyas, Olga Kardailsky, Uwe Schwartz, Krzysztof Zembrzycki, Ian M. Morison, Mark Helm, Dieter Weichenhan, Renata Z. Jurkowska, Felix Krueger, Christoph Plass, Martin Zacharias, Matthias Bochtler, Timothy A. Hore, Tomasz P. Jurkowski
Summary: TET enzymes catalyze the oxidation of 5-methylcytosine bases in DNA and have a strong preference for CGs embedded within transcription factor-binding sites. This preference is determined by intrasubstrate interactions and the flanking CG sequence. The study of TET sequence preferences is physiologically relevant and helps explain the process of DNA demethylation. The most and least favorable TET motifs represent DNA sites bound by methylation-sensitive immediate-early transcription factors and octamer-binding transcription factor 4 (OCT4), shedding light on the function of TET in transcriptional responses and pluripotency support.
Article
Biochemistry & Molecular Biology
Anna Maria Stroynowska-Czerwinska, Magdalena Klimczak, Michal Pastor, Asgar Abbas Kazrani, Katarzyna Misztal, Matthias Bochtler
Summary: PHDs of KMT2A-D guide the full-length proteins to active promoters and enhancers, contributing to positive transcriptional memory. PHDs of KMT2A-D are mutated in cancer, leading to loss-of-function.
CELLULAR AND MOLECULAR LIFE SCIENCES
(2023)
Article
Biochemistry & Molecular Biology
Dermot Harnett, Mateusz C. Ambrozkiewicz, Ulrike Zinnall, Alexandra Rusanova, Ekaterina Borisova, Amelie N. Drescher, Marta Couce-Iglesias, Gabriel Villamil, Rike Dannenberg, Koshi Imami, Agnieszka Munster-Wandowski, Beatrix Fauler, Thorsten Mielke, Matthias Selbach, Markus Landthaler, Christian M. T. Spahn, Victor Tarabykin, Uwe Ohler, Matthew L. Kraushar
Summary: Translation plays a crucial role in modulating the timing and amplification of gene expression during brain development. This study reveals a transient window of dynamic regulation in prenatal brain, where translation upregulation of specific chromatin-binding proteins and downregulation of ribosomal proteins contribute to neuronal subtype differentiation and changes in protein synthesis dynamics. This research highlights the importance of translation in refining transcriptional programs during brain development.
NATURE STRUCTURAL & MOLECULAR BIOLOGY
(2022)
Article
Neurosciences
Saki Katsube, Noriko Koganezawa, Kenji Hanamura, Katherine J. Cuthill, Victor Tarabykin, Mateusz C. Ambrozkiewicz, Hiroshi Kawabe
Summary: This study reveals that the Ube3b gene acts as a negative regulator of excitatory synapse density in the brain, and its loss leads to a decrease in synaptic density.
NEUROSCIENCE LETTERS
(2023)
Article
Neurosciences
Angela Parn, Ditte Olsen, Jurgen Tuvikene, Mathias Kaas, Ekaterina Borisova, Mesut Bilgin, Mie Elhauge, Joachim Vilstrup, Peder Madsen, Mateusz C. Ambrozkiewicz, Roman U. Goz, Tonis Timmusk, Victor Tarabykin, Camilla Gustafsen, Simon Glerup
Summary: PCSK9 impairs LDL cholesterol clearance by degrading LDLR in the liver, but its long-term effect on brain function remains unclear. Research demonstrates that PCSK9 deficiency has no adverse effects on brain development or function in mice, consistent with clinical trials.
FRONTIERS IN MOLECULAR NEUROSCIENCE
(2023)
Article
Neurosciences
Agnieszka Dyrda, Jacek Kuznicki, Lukasz Majewski
Summary: The study found that annexin A3 is a positive modulator of store-operated calcium entry (SOCE), as it increases SOCE amplitude and potentiates Ca2+ ICRAC currents.
ACTA NEUROBIOLOGIAE EXPERIMENTALIS
(2021)