Inference of Functional Properties from Large-scale Analysis of Enzyme Superfamilies

Divergent Evolution in Enolase Superfamily: Strategies for Assigning Functions

(2011) John A. Gerlt et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The evolution of function in strictosidine synthase-like proteins

(2011) Michael A. Hicks et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Curators of the world unite: the International Society of Biocuration

(2010) A. Bateman   BIOINFORMATICS

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

BRENDA, the enzyme information system in 2011

(2010) M. Scheer et al.   NUCLEIC ACIDS RESEARCH

COMBREX: a project to accelerate the functional annotation of prokaryotic genomes

(2010) R. J. Roberts et al.   NUCLEIC ACIDS RESEARCH

GenBank

(2010) D. A. Benson et al.   NUCLEIC ACIDS RESEARCH

Ongoing and future developments at the Universal Protein Resource

(2010)   NUCLEIC ACIDS RESEARCH

Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation

(2010) L. Dethlefsen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Glutathione Transferases Are Structural and Functional Outliers in the Thioredoxin Fold

(2009) Holly J. Atkinson et al.   BIOCHEMISTRY

Graphle: Interactive exploration of large, dense graphs

(2009) Curtis Huttenhower et al.   BMC BIOINFORMATICS

Automatic policing of biochemical annotations using genomic correlations

(2009) Tzu-Lin Hsiao et al.   Nature Chemical Biology

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Using Sequence Similarity Networks for Visualization of Relationships Across Diverse Protein Superfamilies

(2009) Holly J. Atkinson et al.   PLoS One

Protein function prediction – the power of multiplicity

(2009) Robert Rentzsch et al.   TRENDS IN BIOTECHNOLOGY

An Atlas of the Thioredoxin Fold Class Reveals the Complexity of Function-Enabling Adaptations

(2009) Holly J. Atkinson et al.   PLoS Computational Biology

Annotation Error in Public Databases: Misannotation of Molecular Function in Enzyme Superfamilies

(2009) Alexandra M. Schnoes et al.   PLoS Computational Biology

Data Deposition and Annotation at the Worldwide Protein Data Bank

(2008) Shuchismita Dutta et al.   MOLECULAR BIOTECHNOLOGY