Review
Immunology
Marion Mussbacher, Martina Derler, Jose Basilio, Johannes A. Schmid
Summary: Nuclear factor kappa B (NF-kappa B) is a dimeric transcription factor that regulates the expression of chemokines, cytokines, transcription factors, and regulatory proteins, playing a crucial role in inflammation and immunity. Understanding its specific roles in different cell types, tissues, and under different stimuli is important. This review focuses on the role of NF-kappa B in monocytes and macrophages, innate immune cells that exhibit high plasticity and adjust their functions against pathogens and cues from the environment. NF-kappa B activation in macrophages has significant implications in inflammatory diseases and its temporal dynamics are complex.
FRONTIERS IN IMMUNOLOGY
(2023)
Review
Biochemistry & Molecular Biology
Daniela Verzella, Jessica Cornice, Paola Arboretto, Davide Vecchiotti, Mauro Di Vito Nolfi, Daria Capece, Francesca Zazzeroni, Guido Franzoso
Summary: NF-kappa B pathway plays a crucial role in cancer, but there is no effective NF-kappa B inhibitor for treatment yet. Researchers are focusing on developing new drugs targeting upstream regulators or downstream effectors of the NF-kappa B signaling pathway.
Article
Cell Biology
Wenfei Pan, Limei Deng, Haitao Wang, Vivien Ya-Fan Wang
Summary: The NF-kappa B family of dimeric transcription factors regulate various biological functions. A study has revealed that the atypical I kappa B protein, Bcl3, plays a crucial role in enhancing the population of the p52:p52 homodimer within the NF-kappa B family. Bcl3 competes with other NF-kappa B subunits for efficient p52:p52 homodimer formation, leading to the upregulation of target genes involved in cell proliferation, migration, and inflammation. The aberrant activation of Bcl3 and p52 contributes to cancer.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY
(2022)
Article
Immunology
Maha H. Sharawy, Dalia H. El-Kashef, Ahmed A. Shaaban, Dina S. El-Agamy
Summary: This study demonstrated the hepatoprotective activity of sitagliptin against Con A-induced hepatic fibrosis, potentially through enhancement of the Nrf2 signaling pathway and inhibition of NF-Kappa B. Sitagliptin may be a new candidate for suppressing hepatitis-associated fibrosis.
INTERNATIONAL IMMUNOPHARMACOLOGY
(2021)
Article
Biochemistry & Molecular Biology
Matthew Martin, Rasika Mundade, Antja-Voy Hartley, Guanglong Jiang, Jiamin Jin, Steven Sun, Ahmad Safa, George Sandusky, Yunlong Liu, Tao Lu
Summary: ARMC4 is identified as a novel negative regulator of NF-kappa B, and may serve as a potential therapeutic target in colorectal cancer.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Oncology
Mehtap Eren, Nur Kartal, Hatice Pilevneli
Summary: This study found that in p53 mutant Jurkat cells, Wip1 gene is overexpressed, leading to sensitivity to chemotherapeutic agents, and enhancing apoptotic sensitivity by attenuating DNA damage response signaling.
Review
Cell Biology
Giovanna Carra, Lidia Avalle, Laura Secli, Mara Brancaccio, Alessandro Morotti
Summary: NF-kappa B is not only a transcription factor regulating gene expression within the nucleus, but also has functions within cellular organelles. The crosstalk between NF-kappa B and cellular organelles is significant for anticancer therapies.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY
(2022)
Article
Cell Biology
Quan Chen, Hongjian Lu, Chengwei Duan, Xiangyang Zhu, Yi Zhang, Mengmeng Li, Dongmei Zhang
Summary: The study found that PDCD4 may serve as a key regulatory molecule in central nervous system neuroinflammation and oxidative stress-induced neuronal apoptosis, regulating both microglial inflammatory activation and neuronal apoptosis, forming a positive feedback loop. This discovery provides a new perspective for potential therapeutic targets in neuroinflammatory diseases.
Correction
Multidisciplinary Sciences
Jia Sun, Chao Niu, Weijian Ye, Ning An, Gen Chen, Xiaozhong Huang, Jianan Wang, Xixi Chen, Yingjie Shen, Shuai Huang, Ying Wang, Xu Wang, Yang Wang, Litai Jin, Weitao Cong, L. Xiaokun
Summary: During the final preparation, the authors mistakenly assembled some panels in Figure S2I and S9A. The images for AAV9-Scramblecontrol in Figure S2I actually represent AAV9-LacZcontrol. The images for Ad-FGF13 OE+Ad-IKB OE in Figure S9A actually represent Ad-FGF13 NLS-OE. These errors do not affect the results or the conclusions of the paper. The authors apologize for any inconvenience caused to the readers.
Article
Pharmacology & Pharmacy
Yongbin Jing, Mingkun Jia, Jinpeng Zhuang, Dong Han, Changlong Zhou, Jinglong Yan
Summary: This study identified that TLR9 was upregulated in OS cells and promoted cell proliferation and metastasis by activating the NF-kappa B signaling pathway.
BIOLOGICAL & PHARMACEUTICAL BULLETIN
(2022)
Article
Immunology
Hisatake Matsumoto, Brendon P. Scicluna, Kin Ki Jim, Fahimeh Falahi, Wanhai Qin, Berke Gurkan, Erik Malmstrom, Mariska T. Meijer, Joe M. Butler, Hina N. Khan, Tsuyoshi Takagi, Shunsuke Ishii, Marcus J. Schultz, Diederik van de Beek, Alex F. de Vos, Cornelis van 't Veer, Tom van der Poll
Summary: The study indicates that HIVEP1 acts as a negative regulator of NF-κB in monocytes, inhibiting the proinflammatory response induced by bacterial agonists. Dysregulation of HIVEP1 leads to significant changes in the monocyte transcriptome and modulation of NF-κB responsive genes.
FRONTIERS IN IMMUNOLOGY
(2021)
Article
Biochemistry & Molecular Biology
Victor L. Bass, Victor C. Wong, M. Elise Bullock, Suzanne Gaudet, Kathryn Miller-Jensen
Summary: The study found that TNF primarily activates transcription by increasing burst size while maintaining burst frequency for gene promoters with relatively high basal AcH3. When AcH3 is lower or decreased, the contribution of burst frequency to TNF activation increases. TNF positive feedback amplifies gene expression noise resulting from burst size-mediated transcription.
MOLECULAR SYSTEMS BIOLOGY
(2021)
Review
Cell Biology
Kamalakshi Deka, Yinghui Li
Summary: The NF-kappa B signaling pathway plays a major role in inflammation and innate immunity, and is also crucial for cancer initiation and progression. It consists of canonical and non-canonical pathways, with the canonical pathway being prevalent in various human malignancies and inflammation-related diseases. The non-canonical pathway is also increasingly recognized in disease pathogenesis.
Article
Virology
Benjamin E. Nilsson-Payant, Skyler Uhl, Adrien Grimont, Ashley S. Doane, Phillip Cohen, Roosheel S. Patel, Christina A. Higgins, Joshua A. Acklin, Yaron Bram, Vasuretha Chandar, Daniel Blanco-Melo, Maryline Panis, Jean K. Lim, Olivier Elemento, Robert E. Schwartz, Brad R. Rosenberg, Rohit Chandwani, Benjamin R. TenOever
Summary: Research suggests that in SARS-CoV-2 infection, NF-kappa B activation plays a crucial role in viral replication in the absence of traditional IFN-I-related transcription factors. Silencing NF-kappa B transcription factors or using inhibitors can reduce virus replication. These findings contribute to a better understanding of SARS-CoV-2 replication mechanisms and provide a basis for the development of novel treatment approaches.
JOURNAL OF VIROLOGY
(2021)
Article
Oncology
Harald Krenzlin, Mykola Zdioruk, Michal O. Nowicki, Tomer Finkelberg, Naureen Keric, Niels Lemmermann, Magdalena Skubal, E. Antonio Chiocca, Charles H. Cook, Sean E. Lawler
Summary: The study suggests that the CMV-induced upregulation of c-MET may be a potential mechanism involved in the effects of CMV on GBM growth.
Article
Biology
Constantinos G. Broustas, Sanjay Mukherjee, Evan L. Pannkuk, Evagelia C. Laiakis, Albert J. Fornace, Sally A. Amundson
Summary: Radiation biodosimetry based on transcriptomic analysis of peripheral blood is a valuable tool for detecting radiation exposure, but confounding factors may affect its predictive power. The p38 signaling pathway plays an important role in the response to radiation, and its attenuation may protect blood cells from radiation-induced damage.
RADIATION RESEARCH
(2022)
Article
Oncology
Seul-Ki Choi, Minsuh Kim, Haeseung Lee, Youngjoo Kwon, Hyuk-Jin Cha, Se Jin Jang, Younghwa Na, Yun-Sil Lee
Summary: This study investigates the role of HSP27 in EGFR-TKI resistance and proposes potential therapeutic strategies. It is found that HSP27 enhances gefitinib resistance through increased binding with pAKT. Inhibition of HSP27 sensitizes resistant cells to gefitinib.
Article
Genetics & Heredity
Jonathan P. Jacobs, Maryam Goudarzi, Venu Lagishetty, Dalin Li, Tytus Mak, Maomeng Tong, Paul Ruegger, Talin Haritunians, Carol Landers, Philip Fleshner, Eric Vasiliauskas, Andrew Ippoliti, Gil Melmed, David Shih, Stephan Targan, James Borneman, Albert J. Fornace, Dermot P. B. McGovern, Jonathan Braun
Summary: Crohn's disease patients in endoscopic remission show differences in the microbiome compared to unaffected controls, influenced by inflammation, genetic risk, and disease phenotype. Microbial profiling during endoscopic remission can predict disease behavior and progression, offering insight into CD pathogenesis and potential prognostic biomarkers.
Article
Astronomy & Astrophysics
Kamendra Kumar, Bo-Hyun Moon, Kamal Datta, Albert J. Fornace Jr, Shubhankar Suman
Summary: This study examines the status of mammary cancer-associated preneoplasia markers in mice exposed to galactic cosmic radiation (GCR) and gamma-ray irradiation. The findings suggest that mice exposed to GCR have a higher risk of mammary cancer compared to those exposed to gamma-rays, as indicated by increased ductal outgrowth and cell proliferation in mammary tissues.
LIFE SCIENCES IN SPACE RESEARCH
(2023)
Review
Astronomy & Astrophysics
Janice L. Huff, Floriane Poignant, Shirin Rahmanian, Nafisah Khan, Eleanor A. Blakely, Richard A. Britten, Polly Chang, Albert J. Fornace, Megumi Hada, Amy Kronenberg, Ryan B. Norman, Zarana S. Patel, Jerry W. Shay, Michael M. Weil, Lisa C. Simonsen, Tony C. Slaba
Summary: For missions to the moon or Mars, space explorers will face a complex radiation field with various ion species and energies. The NASA Space Radiation Laboratory (NSRL) has developed an innovative galactic cosmic ray simulator (GCRsim) to simulate the space radiation environment and study biological risks. The GCRsim consists of 33 ion beams that simulate the primary and secondary GCR fields encountered in space. A recent virtual workshop assessed the status of the GCRsim, discussing its design and beam selection strategies. This information is important for advancements in space radiobiology.
LIFE SCIENCES IN SPACE RESEARCH
(2023)
Article
Engineering, Biomedical
Kyeong-Mo Koo, Young-Hyun Go, Seong-Min Kim, Chang-Dae Kim, Jeong Tae Do, Tae-Hyung Kim, Hyuk-Jin Cha
Summary: This study presents an electrochemical method for the label-free and non-destructive detection of naive embryonic stem cells (ESCs) derived from mouse ESCs, based on differences in cellular metabolism. By blocking glycolysis and oxidative phosphorylation, it was found that mitochondrial energy generation is the origin of the strong electrochemical signals of naive ESCs. The developed sensing platform can also sensitively identify mouse PSCs derived from MEFs among other cell types.
Article
Biochemical Research Methods
Evan L. Pannkuk, Nicole A. S. -Y. Dorville, Shivani Bansal, Sunil Bansal, Yvonne A. Dzal, Quinn E. Fletcher, Kaleigh J. O. Norquay, Albert J. Fornace Jr, Craig K. R. Willis
Summary: This study investigates the lipidomic changes in bats with white-nose syndrome (WNS) and suggests that oxidative stress occurs in the early stages of WNS before fat depletion, but not inflammatory response. The study compared WNS-susceptible Myotis lucifugus to WNS-resistant Eptesicus fuscus and found altered splenic lipid levels only in M. lucifugus.
JOURNAL OF PROTEOME RESEARCH
(2023)
Article
Biochemistry & Molecular Biology
Santosh Kumar, Shubhankar Suman, Bo-Hyun Moon, Albert J. Fornace Jr, Kamal Datta
Summary: This study reveals that radiation exposure induces long-term oxidative stress in colonic epithelial cells, which is associated with colon carcinogenesis. The NADPH oxidase pathway may play a critical role in propagating this oxidative stress after radiation exposure.
MOLECULAR BIOLOGY REPORTS
(2023)
Review
Cell & Tissue Engineering
Ju-Chan Park, Mihn Jeong Park, Seung-Yeon Lee, Dayeon Kim, Keun-Tae Kim, Hyeon-Ki Jang, Hyuk-Jin Cha
Summary: Due to advances in genome editing technologies, research on human pluripotent stem cells (hPSCs) has achieved breakthroughs in precise alteration of nucleotide bases for disease modeling and cell therapy. Different gene editing toolkits have been developed to avoid unwanted mutations and harmful deletions. This review summarizes recent progress in genome editing methodologies and the utilization of hPSCs for future translational applications.
STEM CELL RESEARCH & THERAPY
(2023)
Article
Medicine, Research & Experimental
Ju-Chan Park, Yun-Jeong Kim, Jun Hee Han, Dayeon Kim, Mihn Jeong Park, Jumee Kim, Hyeon-Ki Jang, Sangsu Bae, Hyuk-Jin Cha
Summary: Through knockout of key proteins MSH2, MSH3, and MSH6 in homozygous state, it is revealed that MutSa and MutSss determine the efficiency of prime editing in a size-dependent manner in human pluripotent stem cells (hPSCs). MSH2 perturbation significantly escalated prime editing efficiency from base mispair to 10 bases, while impaired MutSa and MutSss by MSH6 and MSH3 knockout respectively improved editing efficiency in different size ranges. This study highlights the importance of mismatch repair (MMR) in determining prime editing efficiency in hPSCs and demonstrates the distinct roles of MutSa and MutSss in its outcome.
MOLECULAR THERAPY-NUCLEIC ACIDS
(2023)
Article
Oncology
Elaina Kwiatkowski, Shubhankar Suman, Bhaskar V. S. Kallakury, Kamal Datta, Albert J. Fornace Jr, Santosh Kumar
Summary: This study assessed the expression of multiple stem cell markers in premalignant tumors after low- and high-LET radiation. The results showed a correlation between increased levels of stemness markers and fi-catenin activation in premalignant tumors, particularly in tumors induced by high-LET radiation. The study highlights the complex relationship between radiation types and stem cell phenotypes, and their potential influence on carcinogenesis processes.
Review
Oncology
Kamendra Kumar, Santosh Kumar, Kamal Datta, Albert J. J. Fornace Jr, Shubhankar Suman
Summary: High-energy heavy ions can cause DNA damage, leading to cellular responses such as cell cycle arrest, cell death, and cellular senescence. Prolonged exposure to high-energy ions in space radiation increases the risk of gastrointestinal (GI) carcinogenesis. Alterations in DNA damage response (DDR) can result in gene mutations and pro-inflammatory, pro-oncogenic signaling, accelerating adenoma-to-carcinoma progression during radiation-induced GI cancer development.
Article
Cell & Tissue Engineering
Ho-Chang Jeong, Young-Hyun Go, Joong-Gon Shin, Yun-Jeong Kim, Min-Guk Cho, Dasom Gwon, Hyun Sub Cheong, Haeseung Lee, Jae-Ho Lee, Chang-Young Jang, Hyoung Doo Shin, Hyuk-Jin Cha
Summary: Long-term culture of human embryonic stem cells leads to increased mitotic aberrations, including mitotic delay, multipolar centrosomes, and chromosome mis-segregation, which may be caused by elevated expression of TPX2.
STEM CELL REVIEWS AND REPORTS
(2023)
Article
Cell & Tissue Engineering
Ju-Chan Park, Keun-Tae Kim, Hyeon-Ki Jang, Hyuk-Jin Cha
Summary: Recent advances in hPSCs allow for precise editing of desired bases for disease modeling and cell therapy. Knock-in approaches using Cas9 endonuclease can cause deleterious large deletions, while base editors (BEs) like ABE and CBE provide precise base substitution without DNA double-strand breaks (DSBs). Despite limitations, BEs offer a prospective alternative in hPSCs with minimal off-target effects. This study provides an updated protocol for base editing in hPSCs and an improved methodology for CBE-based substitutions.
INTERNATIONAL JOURNAL OF STEM CELLS
(2023)
Article
Biochemistry & Molecular Biology
Yun-Jeong Kim, Young-Hyun Go, Ho-Chang Jeong, Eun-Ji Kwon, Seong-Min Kim, Hyun Sub Cheong, Wantae Kim, Hyoung Doo Shin, Haeseung Lee, Hyuk-Jin Cha
Summary: Genetic alterations, including copy number variation (CNV), have been observed in human embryonic stem cells (hESCs) during long-term in vitro culture, leading to the induction of BCL2L1 and survival advantage. The study discovered that TPX2 expression, located in the CNV site 20q11.21, results in BCL2L1 induction and survival traits under mitotic stress through YAP1-dependent signaling.
EXPERIMENTAL AND MOLECULAR MEDICINE
(2023)