MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis

MRMPROBS suite for metabolomics using large-scale MRM assays

(2014) Hiroshi Tsugawa et al.   BIOINFORMATICS

The impact of elevated CO2concentration on the quality of algal starch as a potential biofuel feedstock

(2014) Orn-u-ma Tanadul et al.   BIOTECHNOLOGY AND BIOENGINEERING

Metabolite identification: are you sure? And how do your peers gauge your confidence?

(2014) Darren J. Creek et al.   Metabolomics

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

(2014) Hannes L Röst et al.   NATURE BIOTECHNOLOGY

Effects of Escherichia coli on Mixotrophic Growth of Chlorella minutissima and Production of Biofuel Precursors

(2014) Brendan T. Higgins et al.   PLoS One

An Untargeted Metabolomic Workflow to Improve Structural Characterization of Metabolites

(2013) Igor Nikolskiy et al.   ANALYTICAL CHEMISTRY

MRMPROBS: A Data Assessment and Metabolite Identification Tool for Large-Scale Multiple Reaction Monitoring Based Widely Targeted Metabolomics

(2013) Hiroshi Tsugawa et al.   ANALYTICAL CHEMISTRY

Comparison of Information-Dependent Acquisition, SWATH, and MSAll Techniques in Metabolite Identification Study Employing Ultrahigh-Performance Liquid Chromatography–Quadrupole Time-of-Flight Mass Spectrometry

(2013) Xiaochun Zhu et al.   ANALYTICAL CHEMISTRY

Multiplexed MS/MS for improved data-independent acquisition

(2013) Jarrett D Egertson et al.   NATURE METHODS

LipidBlast in silico tandem mass spectrometry database for lipid identification

(2013) Tobias Kind et al.   NATURE METHODS

Qualitative analysis of algal secretions with multiple mass spectrometric platforms

(2012) Tobias Kind et al.   JOURNAL OF CHROMATOGRAPHY A

System Response of Metabolic Networks inChlamydomonas reinhardtiito Total Available Ammonium

(2012) Do Yup Lee et al.   MOLECULAR & CELLULAR PROTEOMICS

Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease

(2011) Zeneng Wang et al.   NATURE

mProphet: automated data processing and statistical validation for large-scale SRM experiments

(2011) Lukas Reiter et al.   NATURE METHODS

PaDEL-descriptor: An open source software to calculate molecular descriptors and fingerprints

(2010) Chun Wei Yap   JOURNAL OF COMPUTATIONAL CHEMISTRY

MassBank: a public repository for sharing mass spectral data for life sciences

(2010) Hisayuki Horai et al.   JOURNAL OF MASS SPECTROMETRY

MetAlign: Interface-Driven, Versatile Metabolomics Tool for Hyphenated Full-Scan Mass Spectrometry Data Preprocessing

(2009) Arjen Lommen   ANALYTICAL CHEMISTRY

MetaboliteDetector: Comprehensive Analysis Tool for Targeted and Nontargeted GC/MS Based Metabolome Analysis

(2009) Karsten Hiller et al.   ANALYTICAL CHEMISTRY

Lipid extraction by methyl-tert-butyl ether for high-throughput lipidomics

(2008) Vitali Matyash et al.   JOURNAL OF LIPID RESEARCH