Intron retention is a widespread mechanism of tumor-suppressor inactivation

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Synonymous Mutations Frequently Act as Driver Mutations in Human Cancers

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Comprehensive molecular profiling of lung adenocarcinoma

(2014) Eric A. Collisson et al.   NATURE

Discovery and saturation analysis of cancer genes across 21 tumour types

(2014) Michael S. Lawrence et al.   NATURE

The human splicing code reveals new insights into the genetic determinants of disease

(2014) H. Y. Xiong et al.   SCIENCE

Interplay between the Cancer Genome and Epigenome

(2013) Hui Shen et al.   CELL

Pick one, but be quick: 5' splice sites and the problems of too many choices

(2013) X. Roca et al.   GENES & DEVELOPMENT

Comprehensive molecular characterization of clear cell renal cell carcinoma

(2013)   NATURE

Integrated genomic characterization of endometrial carcinoma

(2013) Gad Getz et al.   NATURE

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(2013) Cyriac Kandoth et al.   NATURE

Transcriptome and genome sequencing uncovers functional variation in humans

(2013) Tuuli Lappalainen et al.   NATURE

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(2013) Travis I Zack et al.   NATURE GENETICS

Nonsense-mediated mRNA decay: Inter-individual variability and human disease

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RefSeq: an update on mammalian reference sequences

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The UCSC Genome Browser database: 2014 update

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Identification of novel point mutations in splicing sites integrating whole-exome and RNA-seq data in myeloproliferative diseases

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Genomic signatures for predicting survival and adjuvant chemotherapy benefit in patients with non-small-cell lung cancer

(2012) Ryan K Van Laar   BMC Medical Genomics

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Genome and transcriptome sequencing of lung cancers reveal diverse mutational and splicing events

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Comprehensive molecular characterization of human colon and rectal cancer

(2012)   NATURE

Comprehensive molecular portraits of human breast tumours

(2012) Daniel C. Koboldt et al.   NATURE

Comprehensive genomic characterization of squamous cell lung cancers

(2012)   NATURE

TSGene: a web resource for tumor suppressor genes

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Recurrent Hemizygous Deletions in Cancers May Optimize Proliferative Potential

(2012) N. L. Solimini et al.   SCIENCE

ARID1A Mutations in Cancer: Another Epigenetic Tumor Suppressor?

(2012) Jennifer N. Wu et al.   Cancer Discovery

Differential GC Content between Exons and Introns Establishes Distinct Strategies of Splice-Site Recognition

(2012) Maayan Amit et al.   Cell Reports

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(2012) Lulu Huang et al.   Wiley Interdisciplinary Reviews-RNA

pROC: an open-source package for R and S+ to analyze and compare ROC curves

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Hallmarks of Cancer: The Next Generation

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A continuum model for tumour suppression

(2011) Alice H. Berger et al.   NATURE

Integrated genomic analyses of ovarian carcinoma

(2011) D. Bell et al.   NATURE

Non-coding RNAs in human disease

(2011) Manel Esteller   NATURE REVIEWS GENETICS

Using positional distribution to identify splicing elements and predict pre-mRNA processing defects in human genes

(2011) K. H. Lim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BEDTools: a flexible suite of utilities for comparing genomic features

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Alternative splicing and evolution: diversification, exon definition and function

(2010) Hadas Keren et al.   NATURE REVIEWS GENETICS

COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer

(2010) S. A. Forbes et al.   NUCLEIC ACIDS RESEARCH

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(2009) H. Li et al.   BIOINFORMATICS

Activation of the hedgehog-signaling pathway in human cancer and the clinical implications

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