Transport domain unlocking sets the uptake rate of an aspartate transporter

Not Just an Oil Slick: How the Energetics of Protein-Membrane Interactions Impacts the Function and Organization of Transmembrane Proteins

(2014) Sayan Mondal et al.   BIOPHYSICAL JOURNAL

Coupled ion binding and structural transitions along the transport cycle of glutamate transporters

(2014) Grégory Verdon et al.   eLife

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit

(2013) Sander Pronk et al.   BIOINFORMATICS

Small-Molecule Photostabilizing Agents are Modifiers of Lipid Bilayer Properties

(2013) Jose L. Alejo et al.   BIOPHYSICAL JOURNAL

Ultra-stable organic fluorophores for single-molecule research

(2013) Qinsi Zheng et al.   CHEMICAL SOCIETY REVIEWS

The cost of living in the membrane: A case study of hydrophobic mismatch for the multi-segment protein LeuT

(2013) Sayan Mondal et al.   CHEMISTRY AND PHYSICS OF LIPIDS

A two-domain elevator mechanism for sodium/proton antiport

(2013) Chiara Lee et al.   NATURE

Transport dynamics in a glutamate transporter homologue

(2013) Nurunisa Akyuz et al.   NATURE

Unsynchronised subunit motion in single trimeric sodium-coupled aspartate transporters

(2013) Guus B. Erkens et al.   NATURE

Structural basis of the alternating-access mechanism in a bile acid transporter

(2013) Xiaoming Zhou et al.   NATURE

Conformational ensemble of the sodium-coupled aspartate transporter

(2013) Elka R Georgieva et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Binding thermodynamics of a glutamate transporter homolog

(2013) Nicolas Reyes et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Conformational heterogeneity of the aspartate transporter GltPh

(2013) Inga Hänelt et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Structural basis for substrate transport in the GLUT-homology family of monosaccharide transporters

(2013) Esben M Quistgaard et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

LAMBADA and InflateGRO2: Efficient Membrane Alignment and Insertion of Membrane Proteins for Molecular Dynamics Simulations

(2012) Thomas H. Schmidt et al.   Journal of Chemical Information and Modeling

Structural Intermediates in a Model of the Substrate Translocation Path of the Bacterial Glutamate Transporter Homologue GltPh

(2012) Sebastian Stolzenberg et al.   JOURNAL OF PHYSICAL CHEMISTRY B

On the Mechanisms of Cyanine Fluorophore Photostabilization

(2012) Qinsi Zheng et al.   Journal of Physical Chemistry Letters

Enhanced photostability of cyanine fluorophores across the visible spectrum

(2012) Roger B Altman et al.   NATURE METHODS

Crystal structure of an asymmetric trimer of a bacterial glutamate transporter homolog

(2012) Grégory Verdon et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

REFMAC5 for the refinement of macromolecular crystal structures

(2011) Garib N. Murshudov et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Definition and testing of the GROMOS force-field versions 54A7 and 54B7

(2011) Nathan Schmid et al.   EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Na+:Aspartate Coupling Stoichiometry in the Glutamate Transporter Homologue GltPh

(2010) Maarten Groeneveld et al.   BIOCHEMISTRY

Conformational Sampling of Aminoacyl-tRNA during Selection on the Bacterial Ribosome

(2010) Peter Geggier et al.   JOURNAL OF MOLECULAR BIOLOGY

The position of an arginine residue influences substrate affinity and K+ coupling in the human glutamate transporter, EAAT1

(2010) Renae M. Ryan et al.   JOURNAL OF NEUROCHEMISTRY

Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types

(2010) Jeffery B. Klauda et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Single-molecule dynamics of gating in a neurotransmitter transporter homologue

(2010) Yongfang Zhao et al.   NATURE

Mitigating Unwanted Photophysical Processes for Improved Single-Molecule Fluorescence Imaging

(2009) Richa Dave et al.   BIOPHYSICAL JOURNAL

Functional Characterization of a Na+-dependent Aspartate Transporter fromPyrococcus horikoshii

(2009) Renae M. Ryan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Transport mechanism of a bacterial homologue of glutamate transporters

(2009) Nicolas Reyes et al.   NATURE

CHARMM-GUI: A web-based graphical user interface for CHARMM

(2008) Sunhwan Jo et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY