Gating machinery of InsP3R channels revealed by electron cryomicroscopy

Selecting Ions by Size in a Calcium Channel: The Ryanodine Receptor Case Study

(2014) Dirk Gillespie et al.   BIOPHYSICAL JOURNAL

Toward a high-resolution structure of IP3R channel

(2014) Irina I. Serysheva   CELL CALCIUM

Structure of a mammalian ryanodine receptor

(2014) Ran Zalk et al.   NATURE

Structure of the rabbit ryanodine receptor RyR1 at near-atomic resolution

(2014) Zhen Yan et al.   NATURE

Architecture and conformational switch mechanism of the ryanodine receptor

(2014) Rouslan G. Efremov et al.   NATURE

Quantifying the local resolution of cryo-EM density maps

(2013) Alp Kucukelbir et al.   NATURE METHODS

Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM

(2013) Xueming Li et al.   NATURE METHODS

PDBsum additions

(2013) Tjaart A. P. de Beer et al.   NUCLEIC ACIDS RESEARCH

Validation of Cryo-EM Structure of IP3R1 Channel

(2013) Stephen C. Murray et al.   STRUCTURE

Gorgon and pathwalking: Macromolecular modeling tools for subnanometer resolution density maps

(2012) Matthew L. Baker et al.   BIOPOLYMERS

Identification of Functionally Critical Residues in the Channel Domain of Inositol Trisphosphate Receptors

(2012) Cunnigaiper Bhanumathy et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Structural and functional conservation of key domains in InsP3 and ryanodine receptors

(2012) Min-Duk Seo et al.   NATURE

Prevention of overfitting in cryo-EM structure determination

(2012) Sjors H W Scheres et al.   NATURE METHODS

Constructing and Validating Initial Cα Models from Subnanometer Resolution Density Maps with Pathwalking

(2012) Mariah R. Baker et al.   STRUCTURE

Outcome of the First Electron Microscopy Validation Task Force Meeting

(2012) Richard Henderson et al.   STRUCTURE

Modeling protein structure at near atomic resolutions with Gorgon

(2011) Matthew L. Baker et al.   JOURNAL OF STRUCTURAL BIOLOGY

Apo and InsP3-bound crystal structures of the ligand-binding domain of an InsP3 receptor

(2011) Chun-Chi Lin et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Flexible Architecture of IP3R1 by Cryo-EM

(2011) Steven J. Ludtke et al.   STRUCTURE

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Semi-isometric Registration of Line Features for Flexible Fitting of Protein Structures

(2010) S.S. Abeysinghe et al.   COMPUTER GRAPHICS FORUM

Tyr-167/Trp-168 in Type 1/3 Inositol 1,4,5-Trisphosphate Receptor Mediates Functional Coupling between Ligand Binding and Channel Opening

(2010) Haruka Yamazaki et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Cryo-EM of macromolecular assemblies at near-atomic resolution

(2010) Matthew L Baker et al.   Nature Protocols

Streamlined analysis schema for high-throughput identification of endogenous protein complexes

(2010) A. Malovannaya et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein structure prediction on the Web: a case study using the Phyre server

(2009) Lawrence A Kelley et al.   Nature Protocols

REMO: A new protocol to refine full atomic protein models from C-alpha traces by optimizing hydrogen-bonding networks

(2009) Yunqi Li et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Crystal Structure of the Eukaryotic Strong Inward-Rectifier K+ Channel Kir2.2 at 3.1 A Resolution

(2009) X. Tao et al.   SCIENCE

The Jpred 3 secondary structure prediction server

(2008) C. Cole et al.   NUCLEIC ACIDS RESEARCH