Wastewater treatment plant resistomes are shaped by bacterial composition, genetic exchange, and upregulated expression in the effluent microbiomes

ARGs-OAP: online analysis pipeline for antibiotic resistance genes detection from metagenomic data using an integrated structured ARG-database

(2016) Ying Yang et al.   BIOINFORMATICS

Co-occurrence of antibiotic and metal resistance genes revealed in complete genome collection

(2016) Li-Guan Li et al.   ISME Journal

Interconnected microbiomes and resistomes in low-income human habitats

(2016) Erica C. Pehrsson et al.   NATURE

Elucidating selection processes for antibiotic resistance in sewage treatment plants using metagenomics

(2016) Johan Bengtsson-Palme et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Co-occurrence of integrase 1, antibiotic and heavy metal resistance genes in municipal wastewater treatment plants

(2016) Andrea Di Cesare et al.   WATER RESEARCH

Antibiotic resistance genes and human bacterial pathogens: Co-occurrence, removal, and enrichment in municipal sewage sludge digesters

(2016) Feng Ju et al.   WATER RESEARCH

Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes

(2015) Bing Li et al.   ISME Journal

Prevalence and proliferation of antibiotic resistance genes in two municipal wastewater treatment plants

(2015) Daqing Mao et al.   WATER RESEARCH

Exploring antibiotic resistance genes and metal resistance genes in plasmid metagenomes from wastewater treatment plants

(2015) An-Dong Li et al.   Frontiers in Microbiology

Wastewater as a point source of antibiotic-resistance genes in the sediment of a freshwater lake

(2014) Nadine Czekalski et al.   ISME Journal

Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology

(2014) Molly K Gibson et al.   ISME Journal

Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution

(2014) Michael R Gillings et al.   ISME Journal

Bacterial phylogeny structures soil resistomes across habitats

(2014) Kevin J. Forsberg et al.   NATURE

What is a resistance gene? Ranking risk in resistomes

(2014) José L. Martínez et al.   NATURE REVIEWS MICROBIOLOGY

Biocides in urban wastewater treatment plant influent at dry and wet weather: Concentrations, mass flows and possible sources

(2014) Ulla E. Bollmann et al.   WATER RESEARCH

Fate of antibiotic resistance genes in sewage treatment plant revealed by metagenomic approach

(2014) Ying Yang et al.   WATER RESEARCH

The Comprehensive Antibiotic Resistance Database

(2013) Andrew G. McArthur et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Characteristics of Extended-Spectrum β-Lactamase- and Carbapenemase-Producing Enterobacteriaceae Isolates from Rivers and Lakes in Switzerland

(2013) Katrin Zurfluh et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Exploring Variation of Antibiotic Resistance Genes in Activated Sludge over a Four-Year Period through a Metagenomic Approach

(2013) Ying Yang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Community-wide plasmid gene mobilization and selection

(2013) Vladimir Sentchilo et al.   ISME Journal

BacMet: antibacterial biocide and metal resistance genes database

(2013) Chandan Pal et al.   NUCLEIC ACIDS RESEARCH

Antibiotic resistance, antimicrobial residues and bacterial community composition in urban wastewater

(2013) Ana Novo et al.   WATER RESEARCH

Proliferation of Multidrug-Resistant New Delhi Metallo-β-lactamase Genes in Municipal Wastewater Treatment Plants in Northern China

(2013) Yi Luo et al.   Environmental Science & Technology Letters

Evidence for a Complex Relationship between Antibiotics and Antibiotic-Resistant Escherichia Coli: From Medical Center Patients to a Receiving Environment

(2012) Kenny Oberlé et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Functional screening of antibiotic resistance genes from human gut microbiota reveals a novel gene fusion

(2012) Gong Cheng et al.   FEMS MICROBIOLOGY LETTERS

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The Shared Antibiotic Resistome of Soil Bacteria and Human Pathogens

(2012) K. J. Forsberg et al.   SCIENCE

Urban wastewater treatment plants as hotspots for the release of antibiotics in the environment: A review

(2012) I. Michael et al.   WATER RESEARCH

Selection of Resistant Bacteria at Very Low Antibiotic Concentrations

(2011) Erik Gullberg et al.   PLoS Pathogens

Factors influencing antibiotic resistance burden in municipal wastewater treatment plants

(2010) Ana Novo et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Antibiotic Resistance Gene Abundances Associated with Waste Discharges to the Almendares River near Havana, Cuba

(2010) David W. Graham et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Quantitative analysis of a deeply sequenced marine microbial metatranscriptome

(2010) Scott M Gifford et al.   ISME Journal

Call of the wild: antibiotic resistance genes in natural environments

(2010) Heather K. Allen et al.   NATURE REVIEWS MICROBIOLOGY

Release of antibiotic resistant bacteria and genes in the effluent and biosolids of five wastewater utilities in Michigan

(2010) Mariya Munir et al.   WATER RESEARCH

Conjugative DNA Transfer Induces the Bacterial SOS Response and Promotes Antibiotic Resistance Development through Integron Activation

(2010) Zeynep Baharoglu et al.   PLoS Genetics

Detection of 140 clinically relevant antibiotic-resistance genes in the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to selected antibiotics

(2009) R. Szczepanowski et al.   MICROBIOLOGY-SGM

Functional Characterization of the Antibiotic Resistance Reservoir in the Human Microflora

(2009) M. O. A. Sommer et al.   SCIENCE

The Evolution of Class 1 Integrons and the Rise of Antibiotic Resistance

(2008) M. Gillings et al.   JOURNAL OF BACTERIOLOGY

ARDB--Antibiotic Resistance Genes Database

(2008) B. Liu et al.   NUCLEIC ACIDS RESEARCH