Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage

Grazing resistant freshwater bacteria profit from chitin and cell-wall-derived organic carbon

(2013) Ester M. Eckert et al.   ENVIRONMENTAL MICROBIOLOGY

Distribution of acI-Actinorhodopsin genes in Baltic Sea salinity gradients indicates adaptation of facultative freshwater photoheterotrophs to brackish waters

(2013) Ivette Salka et al.   ENVIRONMENTAL MICROBIOLOGY

Community shifts of actively growing lake bacteria after N-acetyl-glucosamine addition: improving the BrdU-FACS method

(2013) Yuya Tada et al.   ISME Journal

Effect of bacteria from the bottom water layer of lake baikal on degradation of diatoms

(2013) Yu. R. Zakharova et al.   PALEONTOLOGICAL JOURNAL

Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like Protein

(2013) Thomas Riedel et al.   PLoS One

Poles Apart: Arctic and Antarctic Octadecabacter strains Share High Genome Plasticity and a New Type of Xanthorhodopsin

(2013) John Vollmers et al.   PLoS One

Successful enrichment of the ubiquitous freshwater acI Actinobacteria

(2013) Sarahi L. Garcia et al.   Environmental Microbiology Reports

Contrasting dynamics in activity and community composition of free-living and particle-associated bacteria in spring

(2012) S Rösel et al.   AQUATIC MICROBIAL ECOLOGY

Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton

(2012) Sarahi L Garcia et al.   ISME Journal

In situ substrate preferences of abundant bacterioplankton populations in a prealpine freshwater lake

(2012) Michaela M Salcher et al.   ISME Journal

Nutrient requirements for growth of the extreme oligotroph ‘Candidatus Pelagibacter ubique’ HTCC1062 on a defined medium

(2012) Paul Carini et al.   ISME Journal

Environmental actinorhodopsin expression revealed by a newin situfiltration and fixation sampler

(2012) Christian Wurzbacher et al.   Environmental Microbiology Reports

Streamlining and Core Genome Conservation among Highly Divergent Members of the SAR11 Clade

(2012) J. Grote et al.   mBio

Rapid successions affect microbial N-acetyl-glucosamine uptake patterns during a lacustrine spring phytoplankton bloom

(2011) Ester M. Eckert et al.   ENVIRONMENTAL MICROBIOLOGY

High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton

(2011) Manuel Martinez-Garcia et al.   ISME Journal

Spatiotemporal distribution and activity patterns of bacteria from three phylogenetic groups in an oligomesotrophic lake

(2011) Michaela M. Salcher et al.   LIMNOLOGY AND OCEANOGRAPHY

Uncoupling of chitinase activity and uptake of hydrolysis products in freshwater bacterioplankton

(2011) Sara Beier et al.   LIMNOLOGY AND OCEANOGRAPHY

A Guide to the Natural History of Freshwater Lake Bacteria

(2011) R. J. Newton et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

IMG: the integrated microbial genomes database and comparative analysis system

(2011) V. M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Energy Starved Candidatus Pelagibacter Ubique Substitutes Light-Mediated ATP Production for Endogenous Carbon Respiration

(2011) Laura Steindler et al.   PLoS One

Metagenomics of the Water Column in the Pristine Upper Course of the Amazon River

(2011) Rohit Ghai et al.   PLoS One

Breaking a paradigm: cosmopolitan and abundant freshwater actinobacteria are low GC

(2011) Rohit Ghai et al.   Environmental Microbiology Reports

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Production optimization of cyanophycinase ChpEal from Pseudomonas alcaligenes DIP1

(2011) Ahmed Sallam et al.   AMB Express

Reconstitution of Gloeobacter Rhodopsin with Echinenone: Role of the 4-Keto Group

(2010) Sergei P. Balashov et al.   BIOCHEMISTRY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteorhodopsin Phototrophy Promotes Survival of Marine Bacteria during Starvation

(2010) Laura Gómez-Consarnau et al.   PLOS BIOLOGY

The Light-Driven Proton Pump Proteorhodopsin Enhances Bacterial Survival during Tough Times

(2010) Edward F. DeLong et al.   PLOS BIOLOGY

Reconstitution ofGloeobacter violaceusRhodopsin with a Light-Harvesting Carotenoid Antenna

(2009) Eleonora S. Imasheva et al.   BIOCHEMISTRY

Comparison of the structure and composition of bacterial communities from temperate and tropical freshwater ecosystems

(2009) Jean-F. Humbert et al.   ENVIRONMENTAL MICROBIOLOGY

Substrate incorporation patterns of bacterioplankton populations in stratified and mixed waters of a humic lake

(2009) Ulrike Buck et al.   ENVIRONMENTAL MICROBIOLOGY

Evidence for structuring of bacterial community composition by organic carbon source in temperate lakes

(2009) Stuart E. Jones et al.   ENVIRONMENTAL MICROBIOLOGY

Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon

(2009) Rachel S. Poretsky et al.   ENVIRONMENTAL MICROBIOLOGY

Contrasting ability to take up leucine and thymidine among freshwater bacterial groups: implications for bacterial production measurements

(2009) María Teresa Pérez et al.   ENVIRONMENTAL MICROBIOLOGY

Actinorhodopsin genes discovered in diverse freshwater habitats and among cultivated freshwater Actinobacteria

(2009) Adrian K Sharma et al.   ISME Journal

Assembling the Marine Metagenome, One Cell at a Time

(2009) Tanja Woyke et al.   PLoS One

Actinorhodopsins: proteorhodopsin-like gene sequences found predominantly in non-marine environments

(2008) Adrian K. Sharma et al.   ENVIRONMENTAL MICROBIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Transcriptome Analysis of Agmatine and Putrescine Catabolism in Pseudomonas aeruginosa PAO1

(2008) H. T. Chou et al.   JOURNAL OF BACTERIOLOGY

The Transporter Classification Database: recent advances

(2008) M. H. Saier et al.   NUCLEIC ACIDS RESEARCH

Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria)

(2008) J. M. Gonzalez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Crystallographic structure of xanthorhodopsin, the light-driven proton pump with a dual chromophore

(2008) H. Luecke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY