Disturbance and temporal partitioning of the activated sludge metacommunity

Robust estimation of microbial diversity in theory and in practice

(2013) Bart Haegeman et al.   ISME Journal

Flexible hybrid membrane treatment systems for tailored nutrient management: A new paradigm in urban wastewater treatment

(2013) D. Vuono et al.   JOURNAL OF MEMBRANE SCIENCE

Comparison of nutrient-removing microbial communities in activated sludge from full-scale MBRs and conventional plants

(2013) A. M. Saunders et al.   WATER SCIENCE AND TECHNOLOGY

Unexpected Diversity during Community Succession in the Apple Flower Microbiome

(2013) A. Shade et al.   mBio

Micropollutant Biotransformation Kinetics Associate with WWTP Process Parameters and Microbial Community Characteristics

(2012) Damian E. Helbling et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Nitrification expanded: discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi

(2012) Dimitry Y Sorokin et al.   ISME Journal

Lake microbial communities are resilient after a whole-ecosystem disturbance

(2012) Ashley Shade et al.   ISME Journal

Metabolic specialization and the assembly of microbial communities

(2012) David R Johnson et al.   ISME Journal

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Decade-long bacterial community dynamics in cystic fibrosis airways

(2012) J. Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assessing and Improving Methods Used in Operational Taxonomic Unit-Based Approaches for 16S rRNA Gene Sequence Analysis

(2011) Patrick D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis

(2011) Y. Sun et al.   BRIEFINGS IN BIOINFORMATICS

Measuring diversity: the importance of species similarity

(2011) Tom Leinster et al.   ECOLOGY

Phylogenetic Diversity and Metabolic Potential of Activated Sludge Microbial Communities in Full-Scale Wastewater Treatment Plants

(2011) Chao Yang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants

(2011) Tong Zhang et al.   ISME Journal

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Bacterial community structures are unique and resilient in full-scale bioenergy systems

(2011) J. J. Werner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fine-scale bacterial community dynamics and the taxa–time relationship within a full-scale activated sludge bioreactor

(2011) George F. Wells et al.   WATER RESEARCH

Analysis of the bacterial community in a laboratory-scale nitrification reactor and a wastewater treatment plant by 454-pyrosequencing

(2011) Lin Ye et al.   WATER RESEARCH

Moving pictures of the human microbiome

(2011) J Gregory Caporaso et al.   GENOME BIOLOGY

‘Candidatus Accumulibacter’ gene expression in response to dynamic EBPR conditions

(2010) Shaomei He et al.   ISME Journal

Postprandial remodeling of the gut microbiota in Burmese pythons

(2010) Elizabeth K Costello et al.   ISME Journal

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

(2010) Jens Reeder et al.   NATURE METHODS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Phylogenetic diversity measures based on Hill numbers

(2010) A. Chao et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

(2010) S. Lucker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Combined niche and neutral effects in a microbial wastewater treatment community

(2010) I. D. Ofiteru et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dormancy contributes to the maintenance of microbial diversity

(2010) S. E. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation

(2010) L. Dethlefsen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies

(2010) Patrick D. Schloss   PLoS Computational Biology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ammonia-oxidizing communities in a highly aerated full-scale activated sludge bioreactor: betaproteobacterial dynamics and low relative abundance of Crenarchaea

(2009) George F. Wells et al.   ENVIRONMENTAL MICROBIOLOGY

Evolving Urban Water and Residuals Management Paradigms: Water Reclamation and Reuse, Decentralization, and Resource Recovery

(2009) Glen T Daigger   WATER ENVIRONMENT RESEARCH

Systematic study of the effect of operating variables on reactor performance and microbial diversity in laboratory-scale activated sludge reactors

(2009) Mujalin K. Pholchan et al.   WATER RESEARCH

Identification and Ecophysiological Characterization of Epiphytic Protein-Hydrolyzing Saprospiraceae ("Candidatus Epiflobacter" spp.) in Activated Sludge

(2008) Y. Xia et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Environmental genomics reveals a functional chlorite dismutase in the nitrite-oxidizing bacterium ‘CandidatusNitrospira defluvii’

(2008) Frank Maixner et al.   ENVIRONMENTAL MICROBIOLOGY

rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea

(2008) Z. M.-P. Lee et al.   NUCLEIC ACIDS RESEARCH

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The influence of sex, handedness, and washing on the diversity of hand surface bacteria

(2008) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effect of mean cell residence time on the performance and microbial diversity of pre-denitrification submerged membrane bioreactors

(2007) Teck Wee Tan et al.   CHEMOSPHERE