Bacterial community responses to a gradient of alkaline mountaintop mine drainage in Central Appalachian streams

Determining indicator taxa across spatial and seasonal gradients in the Columbia River coastal margin

(2013) Caroline S Fortunato et al.   ISME Journal

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Toward the development of microbial indicators for wetland assessment

(2013) Atreyee Sims et al.   WATER RESEARCH

Associating microbiome composition with environmental covariates using generalized UniFrac distances

(2012) Jun Chen et al.   BIOINFORMATICS

How Many Mountains Can We Mine? Assessing the Regional Degradation of Central Appalachian Rivers by Surface Coal Mining

(2012) Emily S. Bernhardt et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Arsenite modifies structure of soil microbial communities and arsenite oxidization potential

(2012) Raphaël Lami et al.   FEMS MICROBIOLOGY ECOLOGY

Contemporary environmental variation determines microbial diversity patterns in acid mine drainage

(2012) Jia-Liang Kuang et al.   ISME Journal

The effects of mountaintop mines and valley fills on the physicochemical quality of stream ecosystems in the central Appalachians: A review

(2012) Michael B. Griffith et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The environmental costs of mountaintop mining valley fill operations for aquatic ecosystems of the Central Appalachians

(2011) Emily S. Bernhardt et al.   Annals of the New York Academy of Sciences

The bacterial biogeography of British soils

(2011) Robert I. Griffiths et al.   ENVIRONMENTAL MICROBIOLOGY

Biodiversity loss in Appalachian headwater streams (Kentucky, USA): Plecoptera and Trichoptera communities

(2011) Gregory J. Pond   HYDROBIOLOGIA

Cumulative impacts of mountaintop mining on an Appalachian watershed

(2011) T. T. Lindberg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Patterns of Ephemeroptera taxa loss in Appalachian headwater streams (Kentucky, USA)

(2010) Gregory J. Pond   HYDROBIOLOGIA

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

Examining the global distribution of dominant archaeal populations in soil

(2010) Scott T Bates et al.   ISME Journal

Microbial community resemblance methods differ in their ability to detect biologically relevant patterns

(2010) Justin Kuczynski et al.   NATURE METHODS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Improving indicator species analysis by combining groups of sites

(2010) Miquel De Cáceres et al.   OIKOS

Mountaintop Mining Consequences

(2010) M. A. Palmer et al.   SCIENCE

Biofilm Bacterial Community Structure in Streams Affected by Acid Mine Drainage

(2009) G. Lear et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Temporal bacterial diversity associated with metal-contaminated river sediments

(2009) Nicholas J. Bouskill et al.   ECOTOXICOLOGY

Hyporheic Microbial Community Development Is a Sensitive Indicator of Metal Contamination

(2009) Kevin P. Feris et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Isotope array analysis of Rhodocyclales uncovers functional redundancy and versatility in an activated sludge

(2009) Martin Hesselsoe et al.   ISME Journal

Global ecological patterns in uncultured Archaea

(2009) Jean-Christophe Auguet et al.   ISME Journal

Heavy metals and soil microbes

(2009) Ken E. Giller et al.   SOIL BIOLOGY & BIOCHEMISTRY

Methylophilaceaelink methanol oxidation to denitrification in freshwater lake sediment as suggested by stable isotope probing and pure culture analysis

(2009) Marina G. Kalyuhznaya et al.   Environmental Microbiology Reports

Effect of Wastewater Treatment Plant Effluent on Microbial Function and Community Structure in the Sediment of a Freshwater Stream with Variable Seasonal Flow

(2008) S. A. Wakelin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Downstream effects of mountaintop coal mining: comparing biological conditions using family- and genus-level macroinvertebrate bioassessment tools

(2008) Gregory J. Pond et al.   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

Changes in the extent of surface mining and reclamation in the Central Appalachians detected using a 1976–2006 Landsat time series

(2008) Philip A. Townsend et al.   REMOTE SENSING OF ENVIRONMENT