Genomes of the class Erysipelotrichia clarify the firmicute origin of the class Mollicutes

Comparative Analysis of Gene Content Evolution in Phytoplasmas and Mycoplasmas

(2012) Ling-Ling Chen et al.   PLoS One

SEED Servers: High-Performance Access to the SEED Genomes, Annotations, and Metabolic Models

(2012) Ramy K. Aziz et al.   PLoS One

The Genome of Erysipelothrix rhusiopathiae, the Causative Agent of Swine Erysipelas, Reveals New Insights into the Evolution of Firmicutes and the Organism's Intracellular Adaptations

(2011) Y. Ogawa et al.   JOURNAL OF BACTERIOLOGY

Robust Computational Analysis of rRNA Hypervariable Tag Datasets

(2011) Maksim Sipos et al.   PLoS One

Accessing the SEED Genome Databases via Web Services API: Tools for Programmers

(2010) Terry Disz et al.   BMC BIOINFORMATICS

Characterizing the Native Codon Usages of a Genome: An Axis Projection Approach

(2010) J. J. Davis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Database resources of the National Center for Biotechnology Information

(2010) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH

A Catalog of Reference Genomes from the Human Microbiome

(2010) et al.   SCIENCE

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

‘CandidatusLumbricincola’, a novel lineage of unculturedMollicutesfrom earthworms of familyLumbricidae

(2009) Taras Y. Nechitaylo et al.   ENVIRONMENTAL MICROBIOLOGY

A feeding tube model for activation of a cell-specific transcription factor during sporulation in Bacillus subtilis

(2009) A. H. Camp et al.   GENES & DEVELOPMENT

Modal Codon Usage: Assessing the Typical Codon Usage of a Genome

(2009) J. J. Davis et al.   MOLECULAR BIOLOGY AND EVOLUTION

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

(2009) Dongying Wu et al.   NATURE

Do mycobacteria produce endospores?

(2009) B. A. Traag et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Novel Secretion Apparatus Maintains Spore Integrity and Developmental Gene Expression in Bacillus subtilis

(2009) Thierry Doan et al.   PLoS Genetics

Diet-Induced Obesity Is Linked to Marked but Reversible Alterations in the Mouse Distal Gut Microbiome

(2008) Peter J. Turnbaugh et al.   Cell Host & Microbe

Database resources of the National Center for Biotechnology Information

(2008) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

Molecular signatures of ribosomal evolution

(2008) E. Roberts et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY

Probabilistic Phylogenetic Inference with Insertions and Deletions

(2008) Elena Rivas et al.   PLoS Computational Biology

A simple, fast, and accurate method of phylogenomic inference

(2008) Martin Wu et al.   GENOME BIOLOGY