Article
Environmental Sciences
Ya-Ping Sun, Bei-Bei Wang, Zhang-Ping Wu, Xi-Wen Zheng, Jing Hou, Heng-Lin Cui
Summary: Five novel halophilic archaeal strains were isolated from coastal saline sediments and sea salt in China. They demonstrated typical morphology and growth characteristics and showed high similarities with existing species. However, based on genetic and phylogenetic analyses, it is confirmed that these strains represent five new species. This is the first report of a novel haloarchaeon isolated from a marine intertidal zone.
FRONTIERS IN MARINE SCIENCE
(2023)
Article
Microbiology
Li-Hua Zhao, Zong-Jie Wang, Cui Song, Xiang Xing, Ying-Ying Liu, Li-Fang Shi, Tong-Tong Yu, You-Ming Zhang, Qian Zhu, Zong-Jun Du
Summary: Two novel bacterial strains, Fulvivirga marina sp. nov. and Fulvivirga sediminis sp. nov., were isolated from marine sediment in Aoshan Bay, Jimo, PR China.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2022)
Article
Microbiology
Olga I. Nedashkovskaya, Nadezhda Y. Otstavnykh, Song-Gun Kim, Andrey D. Kukhlevskiy, Natalia V. Zhukova, Marina P. Isaeva
Summary: A novel Gram-staining negative, strictly aerobic, rod-shaped, and non-motile bacterium, Algicella marina, was isolated from the red alga Tichocarpus crinitus. It belongs to the family Rhodobacteraceae, the order Rhodobacterales, the class Alphaproteobacteria, and the phylum Pseudomonadota.
ARCHIVES OF MICROBIOLOGY
(2022)
Article
Microbiology
Jinshuang Bo, Xuezhen Song, Shuai Wang, Zongjun Du
Summary: Strain F6397(T) isolated from marine sediment in Weihai, PR China is a novel species of the genus Winogradskyella, showing optimal growth at 30-33 degrees C, pH 7.5, and in the presence of 3.0% NaCl.
ARCHIVES OF MICROBIOLOGY
(2021)
Article
Microbiology
Xiao-Qi Xuan, Run-Yuan Mao, Wen-Xing Yu, Jing An, Zong-Jun Du, Da-Shuai Mu
Summary: A novel strain 2V75(T) of Robiginitalea marina was isolated from coastal sediment in Weihai, China. It showed adaptation to a wide range of temperatures, pH levels, and salinity.
ARCHIVES OF MICROBIOLOGY
(2022)
Article
Microbiology
Kannan Asha, Punyasloke Bhadury
Summary: A new actinobacterial species, Myceligenerans indicum sp. nov., has been isolated from the intertidal sediment of Indian Sundarbans mangrove ecosystem. This organism exhibits a wide range of adaptability and potential ability to produce secondary metabolites.
ARCHIVES OF MICROBIOLOGY
(2021)
Article
Microbiology
Kyung June Yim, Dong-Hyun Jung, Seok Won Jang, Sanghwa Park
Summary: The cream-coloured bacterium KSC-6(T) isolated from soil in Daejeon, Republic of Korea, belongs to a new genus in the family Chitinophagaceae and is named Limnovirga soli. This bacterium can grow without NaCl and at a wide range of temperatures and pH levels.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Jiseon Jeong, Veeraya Weerawongwiwat, Yunjeong Lee, Jong-Hwa Kim, Ampaitip Sukhoom, Kijeong Kim, Wonyong Kim
Summary: A novel bacterium strain CAU 1614(T) was isolated from a marine sediment sample collected in the Republic of Korea, belonging to a new genus Halomarinibacterium in the family Flavobacteriaceae. It is a Gram-negative, strictly aerobic, non-motile rod-shaped bacterium with optimal growth conditions at 30 degrees C, pH 7.0, and 2% NaCl. The genetic, phenotypic, and chemotaxonomic characteristics distinguish it as a new species Halomarinibacterium sedimenti gen. nov., sp. nov.
ARCHIVES OF MICROBIOLOGY
(2022)
Article
Microbiology
Lei Song, Hongcan Liu, Qinglei Sun, Xiuzhu Dong, Yuguang Zhou
Summary: The novel bacterial strain SW136(T) isolated from a deep-sea sediment sample from the South China Sea is identified as a new species of the genus Aurantimonas, named Aurantimonas marina sp. nov. It shows unique phylogenetic and phenotypic characteristics distinct from known Aurantimonas species, with specific fatty acid composition and respiratory quinone.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Veeraya Weerawongwiwat, Jong-Hwa Kim, Jung-Hoon Yoon, Jung-Sook Lee, Ampaitip Sukhoom, Wonyong Kim
Summary: A novel Gram-negative bacterium, strain CAU 1598(T), was isolated from marine sand. Phylogenetic analysis suggests that it may belong to a new genus and species.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Hong Ding, Jiahui Liu, Chen Yang, Chaobo Guo, Lijian Ding, Dawoon Jung, Weiyan Zhang
Summary: A modified in situ cultivation technique was developed to isolate uncultured microbes from marine sediments, resulting in the successful isolation of two novel strains. The strains were identified using a polyphasic taxonomic approach. This modified technique was found to be more effective compared to conventional approaches and could be applied to other aquatic environments.
FRONTIERS IN MICROBIOLOGY
(2022)
Article
Microbiology
Lei Song, Hongcan Liu, Ying Huang, Xin Dai, Yuguang Zhou
Summary: Strain SW124(T) is a Gram-stain-negative, non-motile bacterial strain isolated from a deep-sea sediment sample collected from the Indian Ocean, designated as Pararhodonellum marinum gen. nov., sp. nov. It shows a wide range of adaptability to temperature, pH, and NaCl concentration, and is potentially classified into a new genus and species near the genus Rhodonellum in the family Cyclobacteriaceae.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Guilherme S. Hentschke, Vitor Ramos, Angela Pinheiro, Aldo Barreiro, M. Sofia Costa, Adriana Rego, Sebastien Brule, Vitor M. Vasconcelos, Pedro N. Leao
Summary: This study described the morphology, phylogeny, and secondary structures of three strains of marine Cyanobacteria isolated from north Portugal. The results identified three new genera and emphasized the need for taxonomic revision of the Oscillatoriales families.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2022)
Article
Microbiology
Ze-Tao Liu, Jian-Yu Jiao, Lan Liu, Meng-Meng Li, Yu-Zhen Ming, Jiang-Lin Song, Ai-Ping Lv, Wen-Dong Xian, Bao-Zhu Fang, Wen-Jun Li
Summary: The thermophilic bacterium strain SYSU G02662(T) isolated from hot spring sediment in Tibet, PR China, represents a novel species in the family Iamiaceae, with distinctive phenotypic and genotypic characteristics. Its cells are aerobic, Gram-staining-positive, and short rod-shaped, with optimal growth temperature at 45 degrees C. This bacterium is proposed to be named Rhabdothermincola sediminis gen. nov., sp. nov. based on phenotypic, genotypic, and phylogenetic data.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Renju Liu, Qiliang Lai, Li Gu, Peisheng Yan, Zongze Shao
Summary: A20-9(T) is a novel Gram-stain-negative, aerobic bacterium that can grow under various conditions, forming a monophyletic branch in phylogenetic analysis and representing a new genus named Croceimicrobium.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Biotechnology & Applied Microbiology
Yoichi Hayakawa, Tomohiro Yoshida, Shoko Kimata, Kazuo Shin-ya
Summary: The new member of the dunaimycin family, dunaimycin C3, was isolated from a fermented broth of Streptomyces sp. RAN389. It was found to inhibit the expression of the molecular chaperone GRP78 in HT1080 G-L cells in the presence of 10 mM of 2-deoxyglucose with an IC50 of 8.4 nM, as demonstrated by experiments.
JOURNAL OF ANTIBIOTICS
(2021)
Review
Biochemistry & Molecular Biology
Mujeeb Khan, Syed F. Adil, Hamad Z. Alkhathlan, Muhammad N. Tahir, Sadia Saif, Merajuddin Khan, Shams T. Khan
Summary: The article summarizes the three deadly pandemics associated with novel coronaviruses that humans have witnessed in the twenty-first century: SARS, MERS, and COVID-19. Specifically, it describes the epidemiological characteristics of COVID-19, such as transmission, death rate, and discusses various treatment strategies and different approaches to vaccine development.
Article
Multidisciplinary Sciences
Munawwar Ali Khan, Shams Tabrez Khan, Milred Cedric Sequeira, Sultan Mohammad Faheem, Naushad Rais
Summary: This study analyzed the microbial communities in three anaerobic digesters at the Jebel Ali Sewage Water Treatment Plant in Dubai, United Arab Emirates. The results showed that the bacterial communities were dominated by fermentative and thermophilic bacteria, while the Archaea were mainly Methanocorpusculum and other hydrogenotrophic archaea. The diverse microbial composition in the digesters may be influenced by the climatic conditions and the use of desalinated seawater in Dubai.
Article
Microbiology
Takao Iino, Nobuaki Shono, Kimio Ito, Ryuhei Nakamura, Kazuo Sueoka, Shigeaki Harayama, Moriya Ohkuma
Summary: The study isolated four Prolixibacter strains, belonging to the Bacteroidetes phylum, that were able to reduce nitrate under anaerobic conditions, leading to enhanced corrosion of Fe-0 and carbon steel. The corrosion was mainly attributed to biological reduction of nitrate to nitrite followed by chemical oxidation of Fe-0 to Fe2+ and Fe3+.
Article
Chemistry, Multidisciplinary
Hayama Tsutsumi, Yoshitaka Moriwaki, Tohru Terada, Kentaro Shimizu, Kazuo Shin-ya, Yohei Katsuyama, Yasuo Ohnishi
Summary: In this study, we characterized the geranyl pyrophosphate C6-methyltransferase BezA and investigated the molecular basis of its catalytic mechanisms using multiple strategies. The results revealed the important role of E170 as a catalytic base in completing the methylation reaction. Additionally, we successfully altered the substrate specificity by introducing a W210A substitution, resulting in a novel farnesyl pyrophosphate C6-methyltransferase.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
(2022)
Article
Plant Sciences
Shams Tabrez Khan, Syed Farooq Adil, Mohammed Rafi Shaik, Hamad Z. Alkhathlan, Merajuddin Khan, Mujeeb Khan
Summary: A large number of nanomaterials-based products are being commercially engineered and produced, resulting in the disposal of engineered nanomaterials (ENMs) into soil in significant quantities. The presence of ENMs in soil considerably affects the soil microbiome and crucial microbial processes. Understanding the influence of these ENMs on the soil microbiome is essential for sustainable agriculture.
Article
Chemistry, Multidisciplinary
Ryuhei Nagata, Hironori Suemune, Masaya Kobayashi, Tetsuro Shinada, Kazuo Shin-ya, Makoto Nishiyama, Tomoya Hino, Yusuke Sato, Tomohisa Kuzuyama, Shingo Nagano
Summary: This study elucidated the crystal structures of a new subclass of aromatic substrate PTs, and highlighted the essential roles of Ile and Asp residues in interactions with prenyl acceptors. A novel deprotonation mechanism involving a catalytic triad for aromatic substrate PTs was proposed based on structural and mutational analyses.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
(2022)
Article
Biotechnology & Applied Microbiology
Ayumu Demachi, Satoshi Ohte, Ryuji Uchida, Kazuo Shin-ya, Taichi Ohshiro, Hiroshi Tomoda, Haruo Ikeda
Summary: The study focused on the key intermediate in scopranone biosynthesis, prescopranone, and elucidated its structure. The results showed that prescopranone is produced through modular polyketide synthesis, and it exhibits inhibitory activity on BMP receptor mutant cell lines.
JOURNAL OF ANTIBIOTICS
(2022)
Article
Biotechnology & Applied Microbiology
Kaori Oyama, Izumi Matsuwaki, Maika Ito, Rei Iwahori, Haruka Nagata, Isuzu Nakamura, Ayaka Kondo, Akane Kodaka, Yurika Fuseya, Haruka Yamamoto, Yui Ueyama, Yoko Ide, Yuki Kasai, Shigeaki Harayama, Misako Kato
Summary: In this study, the de novo synthesis of triacylglycerol (TAG) in Coccomyxa sp. Obi strain under nitrogen (N)-replete and N-limiting conditions was analyzed. The results showed that TAG synthesis is limited by fatty acid supply under N-replete conditions, while it is enhanced under N-limiting conditions. The expression of the acyl-ACP thioesterase, FAT1, involved in releasing fatty acids from acyl-ACP, was induced under N-limiting conditions. Furthermore, the turnover of TAG was significant under N-replete conditions. The slow conversion of diacylglycerol to TAG partly explained the slower rate of TAG synthesis compared to polar lipid synthesis under N-limiting conditions.
ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS
(2022)
Article
Chemistry, Multidisciplinary
Kenichi Matsuda, Kuga Arima, Satoko Akiyama, Yuito Yamada, Yo Abe, Hikaru Suenaga, Junko Hashimoto, Kazuo Shin-ya, Makoto Nishiyama, Toshiyuki Wakimoto
Summary: Functional groups containing nitrogen-nitrogen bonds are uncommon but can be found in a wide range of natural products. Recent research on the biosynthetic pathways of these functional groups has revealed the presence of overlooked biosynthetic genes in bacteria, indicating the existence of unidentified natural products with unique functional groups.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
(2022)
Article
Chemistry, Multidisciplinary
Seiji Kawai, Ryota Hagihara, Kazuo Shin-ya, Yohei Katsuyama, Yasuo Ohnishi
Summary: The diazo group is an important functional group that can confer biological activity to natural products owing to its high reactivity. This study discovered a new diazo group biosynthesis gene cluster and revealed an unprecedented pathway for amino group removal via diazotization.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
(2022)
Article
Biochemistry & Molecular Biology
Fumitaka Kudo, Kosuke Kishikawa, Kazuma Tsuboi, Takafusa Kido, Takeo Usui, Junko Hashimoto, Kazuo Shin-ya, Akimasa Miyanaga, Tadashi Eguchi
Summary: In this study, the biosynthetic gene cluster for virustomycin A, an antibiotic produced by Streptomyces graminofaciens A-8890, was identified. The study also demonstrated the exchangeability of the acyltransferase domain between the PKSs involved in FD-891 biosynthesis and the Vsm PKSs. By exchanging the malonyltransferase domain in the loading module of the PKSs, a two-carbon-elongated analog 26-ethyl-FD-891 was successfully produced with potent cytotoxic activity.
Article
Chemistry, Organic
Fumitaka Kudo, Atsushi Minato, Shusuke Sato, Nayuta Nagano, Chitose Maruyama, Yoshimitsu Hamano, Junko Hashimoto, Ikuko Kozone, Kazuo Shin-ya, Tadashi Eguchi
Summary: This study determined that the radical SAM methylase Orf29 catalyzes the C-methylation of SAM to produce (4'' R)-4''-methyl-SAM. It was also found that the 5'-deoxyadenosyl radical generated by Orf29 extracts the pro-R hydrogen atom from the C-4'' position of SAM to generate a radical intermediate, which reacts with methylcobalamin to form (4'' R)-4''-methyl-SAM. Therefore, the Orf29-catalyzed C-methylation reaction was confirmed to proceed with retention of configuration.
Article
Chemistry, Multidisciplinary
Kuga Arima, Satoko Akiyama, Kazuo Shin-ya, Kenichi Matsuda, Toshiyuki Wakimoto
Summary: Heterocycles with N-N bonds are important components of synthetic drugs and natural products, but their biosynthetic logic is poorly understood. Through gene knockouts and biochemical experiments, we have revealed the major steps in actinopyridazinone biosynthesis, including the unprecedented mechanism involving carrier protein-mediated dihydropyridazinone formation.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
(2023)
Article
Biotechnology & Applied Microbiology
Shiina Suzuki, Shun Saito, Yuki Narushima, Shunta Kodani, Noritaka Kagaya, Hikaru Suenaga, Kazuo Shin-ya, Midori A. Arai
Summary: We screened a library of microbial extracts and compounds and identified Pulicatins F and G, as well as cyclopiazonic acid (CPA), as Notch activators. The synthesized Pulicatin F and G showed activation activity, while CPA increased protein levels and mRNA expression of HES1. CPA also inhibited the expression of FLT3, which is known to inhibit apoptosis, and induced apoptosis in HL-60 cells. The Notch activation by CPA was canceled by the addition of FK506, an inhibitor of calcineurin.
JOURNAL OF ANTIBIOTICS
(2023)