期刊
MOLECULAR ECOLOGY RESOURCES
卷 15, 期 5, 页码 1238-1242出版社
WILEY
DOI: 10.1111/1755-0998.12386
关键词
domesticated animal; haplogroup tree; mtDNA; phylogeny; software
资金
- 973 program [2013CB835200, 2013CB835204]
- Youth Innovation Promotion Association, Chinese Academy of Sciences
- Chinese Academy of Sciences
Mitochondrial DNA (mtDNA) is widely used in various genetic studies of domesticated animals. Many applications require comprehensive knowledge about the phylogeny of mtDNA variants. Herein, we provide the most up-to-date mtDNA phylogeny (i.e. haplogroup tree or matrilineal genealogy) and a standardized hierarchical haplogroup nomenclature system for domesticated cattle, dogs, goats, horses, pigs, sheep, yaks and chickens. These high-resolution mtDNA haplogroup trees based on 1240 complete or near-complete mtDNA genome sequences are available in open resource DomeTree (). In addition, we offer the software MitoToolPy () to facilitate the mtDNA data analyses. We will continuously and regularly update DomeTree and MitoToolPy.
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