Transcriptomics of colour patterning and coloration shifts in crows

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

The genomic landscape underlying phenotypic integrity in the face of gene flow in crows

(2014) J. W. Poelstra et al.   SCIENCE

Reproductive isolation related to mimetic divergence in the poison frog Ranitomeya imitator

(2014) Evan Twomey et al.   Nature Communications

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

(2013) Ning Leng et al.   BIOINFORMATICS

9-cisretinoic acid is the ALDH1A1 product that stimulates melanogenesis

(2013) Elyse K Paterson et al.   EXPERIMENTAL DERMATOLOGY

An extensive candidate gene approach to speciation: diversity, divergence and linkage disequilibrium in candidate pigmentation genes across the European crow hybrid zone

(2013) J W Poelstra et al.   HEREDITY

Pleiotropy in the melanocortin system: expression levels of this system are associated with melanogenesis and pigmentation in the tawny owl (Strix aluco)

(2013) Guillaume Emaresi et al.   MOLECULAR ECOLOGY

Sexual selection accelerates signal evolution during speciation in birds

(2013) N. Seddon et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Topology of Feather Melanocyte Progenitor Niche Allows Complex Pigment Patterns to Emerge

(2013) S. J. Lin et al.   SCIENCE

Genetics of colouration in birds

(2013) Alexandre Roulin et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Causal reasoning on biological networks: interpreting transcriptional changes

(2012) Leonid Chindelevitch et al.   BIOINFORMATICS

Beyond differential expression: the quest for causal mutations and effector molecules

(2012) Nicholas J Hudson et al.   BMC GENOMICS

Genetic divergences and intraspecific variation in corvids of the genus Corvus (Aves: Passeriformes: Corvidae) - a first survey based on museum specimens

(2012) Elisabeth Haring et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Accelerated speciation in colour-polymorphic birds

(2012) Andrew F. Hugall et al.   NATURE

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Unraveling the thread of nature’s tapestry: the genetics of diversity and convergence in animal pigmentation

(2012) Marcus R. Kronforst et al.   Pigment Cell & Melanoma Research

How colorful are birds? Evolution of the avian plumage color gamut

(2011) Mary Caswell Stoddard et al.   BEHAVIORAL ECOLOGY

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Hematopoietic prostaglandin D synthase (H-Pgds) is expressed in the early embryonic gonad and participates to the initial nuclear translocation of the SOX9 protein

(2011) Brigitte Moniot et al.   DEVELOPMENTAL DYNAMICS

Association between melanism, physiology and behaviour: A role for the melanocortin system

(2011) Alexandre Roulin et al.   EUROPEAN JOURNAL OF PHARMACOLOGY

The Developmental Role of Agouti in Color Pattern Evolution

(2011) M. Manceau et al.   SCIENCE

Unexplained recurrent features of the plumage of birds

(2010) M. de L. BROOKE   IBIS

Vertebrate pigmentation: from underlying genes to adaptive function

(2010) Joanna K. Hubbard et al.   TRENDS IN GENETICS

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Microarray analysis sheds light on the dedifferentiating role of agouti signal protein in murine melanocytes via the Mc1r

(2009) Elodie Le Pape et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of Coloration Patterns

(2008) Meredith E. Protas et al.   Annual Review of Cell and Developmental Biology

Melanocortin-1 Receptor Signaling Markedly Induces the Expression of the NR4A Nuclear Receptor Subgroup in Melanocytic Cells

(2008) Aaron G. Smith et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

An analysis of population genetic differentiation and genotype-phenotype association across the hybrid zone of carrion and hooded crows using microsatellites andMC1R

(2008) FREDRIK HAAS et al.   MOLECULAR ECOLOGY

From Abbott Thayer to the present day: what have we learned about the function of countershading?

(2008) H. M Rowland   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Pleiotropy in the melanocortin system, coloration and behavioural syndromes

(2008) A DUCREST et al.   TRENDS IN ECOLOGY & EVOLUTION