Estimating the temporal and spatial extent of gene flow among sympatric lizard populations (genusSceloporus) in the southern Mexican highlands

Model choice for phylogeographic inference using a large set of models

(2014) Tara A. Pelletier et al.   MOLECULAR ECOLOGY

Phylogeography of the Trans-Volcanic bunchgrass lizard (Sceloporus bicanthalis) across the highlands of south-eastern Mexico

(2013) Adam D. Leaché et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

THE CHALLENGE OF SPECIES DELIMITATION AT THE EXTREMES: DIVERSIFICATION WITHOUT MORPHOLOGICAL CHANGE IN PHILIPPINE SUN SKINKS

(2013) Anthony J. Barley et al.   EVOLUTION

Comparative Species Divergence across Eight Triplets of Spiny Lizards (Sceloporus) Using Genomic Sequence Data

(2013) Adam D. Leaché et al.   Genome Biology and Evolution

Influence of the geological history of the Trans-Mexican Volcanic Belt on the diversification ofNolina parviflora(Asparagaceae: Nolinoideae)

(2013) Eduardo Ruiz-Sanchez et al.   JOURNAL OF BIOGEOGRAPHY

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Gene flow and the maintenance of species boundaries

(2013) Erica L. Larson et al.   MOLECULAR ECOLOGY

On the Biogeography of Centipeda: A Species-Tree Diffusion Approach

(2013) S. Nylinder et al.   SYSTEMATIC BIOLOGY

Species Delimitation Using Bayes Factors: Simulations and Application to the Sceloporus scalaris Species Group (Squamata: Phrynosomatidae)

(2013) Jared A. Grummer et al.   SYSTEMATIC BIOLOGY

The Influence of Gene Flow on Species Tree Estimation: A Simulation Study

(2013) Adam D. Leaché et al.   SYSTEMATIC BIOLOGY

Assessing model fit in phylogeographical investigations: an example from the North American sandbar willowSalix melanopsis

(2012) Yi-Hsin Erica Tsai et al.   JOURNAL OF BIOGEOGRAPHY

Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty

(2012) Guy Baele et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogeography of speciation: allopatric divergence and secondary contact between outcrossing and selfingClarkia

(2012) JAMES B. PETTENGILL et al.   MOLECULAR ECOLOGY

The biogeography of mitochondrial and nuclear discordance in animals

(2012) DAVID P. L. TOEWS et al.   MOLECULAR ECOLOGY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Phylogeography of Sardinian Cave Salamanders (Genus Hydromantes) Is Mainly Determined by Geomorphology

(2012) Ylenia Chiari et al.   PLoS One

SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics

(2011) F. Bielejec et al.   BIOINFORMATICS

Tracing the origins of widespread highland species: a case of Neogene diversification across the Mexican sierras in an endemic lizard

(2011) ROBERT W. BRYSON JR et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Structurama: Bayesian Inference of Population Structure

(2011) John P. Huelsenbeck et al.   Evolutionary Bioinformatics

Joint Inference of Population Assignment and Demographic History

(2011) Sang Chul Choi et al.   GENETICS

Phylogeography of Middle American gophersnakes: mixed responses to biogeographical barriers across the Mexican Transition Zone

(2011) Robert W. Bryson et al.   JOURNAL OF BIOGEOGRAPHY

Diversification in the Mexican horned lizard Phrynosoma orbiculare across a dynamic landscape

(2011) Robert W. Bryson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Relative roles of Neogene vicariance and Quaternary climate change on the historical diversification of bunchgrass lizards (Sceloporus scalaris group) in Mexico

(2011) Robert W. Bryson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Comparative Phylogeography of a Coevolved Community: Concerted Population Expansions in Joshua Trees and Four Yucca Moths

(2011) Christopher Irwin Smith et al.   PLoS One

Identification of 104 rapidly-evolving nuclear protein-coding markers for amplification across scaled reptiles using genomic resources

(2011) Daniel M. Portik et al.   Conservation Genetics Resources

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Chromosome Evolution and Diversification in North American Spiny Lizards (Genus Sceloporus)

(2010) A.D. Leaché et al.   CYTOGENETIC AND GENOME RESEARCH

The computer program STRUCTURE does not reliably identify the main genetic clusters within species: simulations and implications for human population structure

(2010) S T Kalinowski   HEREDITY

Evolutionary drivers of phylogeographical diversity in the highlands of Mexico: a case study of the Crotalus triseriatus species group of montane rattlesnakes

(2010) Robert W. Bryson et al.   JOURNAL OF BIOGEOGRAPHY

Phylogeography Takes a Relaxed Random Walk in Continuous Space and Time

(2010) P. Lemey et al.   MOLECULAR BIOLOGY AND EVOLUTION

Choosing among Partition Models in Bayesian Phylogenetics

(2010) Y. Fan et al.   MOLECULAR BIOLOGY AND EVOLUTION

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Bayesian species delimitation using multilocus sequence data

(2010) Z. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Accommodating Heterogenous Rates of Evolution in Molecular Divergence Dating Methods: An Example Using Intercontinental Dispersal of Plestiodon (Eumeces) Lizards

(2010) Matthew C. Brandley et al.   SYSTEMATIC BIOLOGY

Improving Marginal Likelihood Estimation for Bayesian Phylogenetic Model Selection

(2010) Wangang Xie et al.   SYSTEMATIC BIOLOGY

Statistical Phylogeography

(2009) L. Lacey Knowles   Annual Review of Ecology Evolution and Systematics

Isolation with Migration Models for More Than Two Populations

(2009) Jody Hey   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic relationships of phrynosomatid lizards based on nuclear and mitochondrial data, and a revised phylogeny for Sceloporus

(2009) John J. Wiens et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeography’s past, present, and future: 10 years after Avise, 2000

(2009) M.J. Hickerson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Species trees for spiny lizards (Genus Sceloporus): Identifying points of concordance and conflict between nuclear and mitochondrial data

(2009) Adam D. Leaché   MOLECULAR PHYLOGENETICS AND EVOLUTION

Species Tree Discordance Traces to Phylogeographic Clade Boundaries in North American Fence Lizards (Sceloporus)

(2009) Adam D. Leaché   SYSTEMATIC BIOLOGY

Bayesian Phylogeography Finds Its Roots

(2009) Philippe Lemey et al.   PLoS Computational Biology

Inference of structure in subdivided populations at low levels of genetic differentiation—the correlated allele frequencies model revisited

(2008) Gilles Guillot   BIOINFORMATICS

TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops

(2008) I. Milne et al.   BIOINFORMATICS

A GENEALOGICAL APPROACH TO QUANTIFYING LINEAGE DIVERGENCE

(2008) Michael P. Cummings et al.   EVOLUTION

Rapid development of multiple nuclear loci for phylogenetic analysis using genomic resources: An example from squamate reptiles

(2008) Ted M. Townsend et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Coalescent genealogy samplers: windows into population history

(2008) Mary K. Kuhner   TRENDS IN ECOLOGY & EVOLUTION

Speciation, hybrid zones and phylogeography - or seeing genes in space and time

(2003) Godfrey M. Hewitt   MOLECULAR ECOLOGY

Did the Pleistocene glaciations promote divergence? Tests of explicit refugial models in montane grasshopprers

(2003) L. Lacey Knowles   MOLECULAR ECOLOGY