Tracking the progression of speciation: variable patterns of introgression across the genome provide insights on the species delimitation between progenitor-derivative spruces (Picea mariana×P. rubens)

Integrating phylogeography and paleoecology to investigate the origin and dynamics of hybrid zones: insights from two widespread North American firs

(2015) Benjamin Cinget et al.   MOLECULAR ECOLOGY

Conifer genomics and adaptation: at the crossroads of genetic diversity and genome function

(2015) Julien Prunier et al.   NEW PHYTOLOGIST

Genomic variation across landscapes: insights and applications

(2015) Jason G. Bragg et al.   NEW PHYTOLOGIST

Babelomics 5.0: functional interpretation for new generations of genomic data

(2015) Roberto Alonso et al.   NUCLEIC ACIDS RESEARCH

A Genome Scan for Genes Underlying Microgeographic-Scale Local Adaptation in a Wild Arabidopsis Species

(2015) Shosei Kubota et al.   PLoS Genetics

Hybridization, Introgression, and the Nature of Species Boundaries

(2014) Richard G. Harrison et al.   JOURNAL OF HEREDITY

Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data

(2013) Inanc Birol et al.   BIOINFORMATICS

Stronger spatial genetic structure in recolonized areas than in refugia in the European beech

(2013) Guillaume de Lafontaine et al.   MOLECULAR ECOLOGY

Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation

(2013) Philip W. Hedrick   MOLECULAR ECOLOGY

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

Adaptation and exogenous selection in aPicea glauca×Picea engelmanniihybrid zone: implications for forest management under climate change

(2013) Amanda R. De La Torre et al.   NEW PHYTOLOGIST

Alternative forms for genomic clines

(2013) Benjamin M. Fitzpatrick   Ecology and Evolution

Outlier loci highlight the direction of introgression in oaks

(2012) E. Guichoux et al.   MOLECULAR ECOLOGY

Genetic architecture in a marine hybrid zone: comparing outlier detection and genomic clines analysis in the bivalveMacoma balthica

(2012) P. C. LUTTIKHUIZEN et al.   MOLECULAR ECOLOGY

Genomic and phenotypic architecture of a spruce hybrid zone (Picea sitchensis × P. glauca)

(2012) Jill A. Hamilton et al.   MOLECULAR ECOLOGY

Asymmetric hybridization and gene flow between Joshua trees (Agavaceae:Yucca) reflect differences in pollinator host specificity

(2012) Tyler N. Starr et al.   MOLECULAR ECOLOGY

Differential introgression reveals candidate genes for selection across a spruce (Picea sitchensis × P. glauca) hybrid zone

(2012) Jill A. Hamilton et al.   NEW PHYTOLOGIST

Large-scale asymmetric introgression of cytoplasmic DNA reveals Holocene range displacement in a North American boreal pine complex

(2012) Julie Godbout et al.   Ecology and Evolution

PROGRESS TOWARD A GENERAL SPECIES CONCEPT

(2011) Bernhard Hausdorf   EVOLUTION

Scanning the genome for gene SNPs related to climate adaptation and estimating selection at the molecular level in boreal black spruce

(2011) JULIEN PRUNIER et al.   MOLECULAR ECOLOGY

Bayesian estimation of genomic clines

(2011) ZACHARIAH GOMPERT et al.   MOLECULAR ECOLOGY

The coupling hypothesis: why genome scans may fail to map local adaptation genes

(2011) NICOLAS BIERNE et al.   MOLECULAR ECOLOGY

Direction and extent of organelle DNA introgression between two spruce species in the Qinghai-Tibetan Plateau

(2011) Fang K. Du et al.   NEW PHYTOLOGIST

What can patterns of differentiation across plant genomes tell us about adaptation and speciation?

(2011) J. L. Strasburg et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A White Spruce Gene Catalog for Conifer Genome Analyses

(2011) Philippe Rigault et al.   PLANT PHYSIOLOGY

Auxin Response Factor2 (ARF2) and Its Regulated Homeodomain Gene HB33 Mediate Abscisic Acid Response in Arabidopsis

(2011) Li Wang et al.   PLoS Genetics

Genomic Admixture Analysis in European Populus spp. Reveals Unexpected Patterns of Reproductive Isolation and Mating

(2010) C. Lexer et al.   GENETICS

Subgroup 4 R2R3-MYBs in conifer trees: gene family expansion and contribution to the isoprenoid- and flavonoid-oriented responses

(2010) Frank Bedon et al.   JOURNAL OF EXPERIMENTAL BOTANY

Molecular Evolution of Regulatory Genes in Spruces from Different Species and Continents: Heterogeneous Patterns of Linkage Disequilibrium and Selection but Correlated Recent Demographic Changes

(2010) Marie-Claire Namroud et al.   JOURNAL OF MOLECULAR EVOLUTION

From glacial refugia to modern populations: new assemblages of organelle genomes generated by differential cytoplasmic gene flow in transcontinental black spruce

(2010) SÉBASTIEN GÉRARDI et al.   MOLECULAR ECOLOGY

Using differential introgression in hybrid zones to identify genomic regions involved in speciation

(2010) BRET A. PAYSEUR   Molecular Ecology Resources

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

What’s good for you may be good for me: evidence for adaptive introgression of multiple traits in wild sunflower

(2010) Xavier Vekemans   NEW PHYTOLOGIST

Adaptive introgression of abiotic tolerance traits in the sunflower Helianthus annuus

(2010) Kenneth D. Whitney et al.   NEW PHYTOLOGIST

Molecular events of apical bud formation in white spruce, Picea glauca

(2010) WALID EL KAYAL et al.   PLANT CELL AND ENVIRONMENT

Discordant mtDNA and cpDNA phylogenies indicate geographic speciation and reticulation as driving factors for the diversification of the genus Picea

(2010) Marie Bouillé et al.   Tree Genetics & Genomes

COMPARATIVE GENOMIC AND POPULATION GENETIC ANALYSES INDICATE HIGHLY POROUS GENOMES AND HIGH LEVELS OF GENE FLOW BETWEEN DIVERGENTHELIANTHUSSPECIES

(2009) Nolan C. Kane et al.   EVOLUTION

Detecting loci under selection in a hierarchically structured population

(2009) L Excoffier et al.   HEREDITY

Variable patterns of introgression in two sculpin hybrid zones suggest that genomic isolation differs among populations

(2009) A. W. NOLTE et al.   MOLECULAR ECOLOGY

Speciation inPasserinabuntings: introgression patterns of sex-linked loci identify a candidate gene region for reproductive isolation

(2009) MATTHEW D. CARLING et al.   MOLECULAR ECOLOGY

A powerful regression-based method for admixture mapping of isolation across the genome of hybrids

(2009) ZACHARIAH GOMPERT et al.   MOLECULAR ECOLOGY

Auxin Receptors and Plant Development: A New Signaling Paradigm

(2008) Keithanne Mockaitis et al.   Annual Review of Cell and Developmental Biology

Enhancing genetic mapping of complex genomes through the design of highly-multiplexed SNP arrays: application to the large and unsequenced genomes of white spruce and black spruce

(2008) Nathalie Pavy et al.   BMC GENOMICS

A population genomic analysis of species boundaries: neutral processes, adaptive divergence and introgression between two hybridizing plant species

(2008) A. M. MINDER et al.   MOLECULAR ECOLOGY

Scanning the genome for gene single nucleotide polymorphisms involved in adaptive population differentiation in white spruce

(2008) MARIE-CLAIRE NAMROUD et al.   MOLECULAR ECOLOGY

Global monitoring of autumn gene expression within and among phenotypically divergent populations of Sitka spruce (Picea sitchensis)

(2008) Jason A. Holliday et al.   NEW PHYTOLOGIST

The genic view of plant speciation: recent progress and emerging questions

(2008) C. Lexer et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Outlier identification in high dimensions

(2007) Peter Filzmoser et al.   COMPUTATIONAL STATISTICS & DATA ANALYSIS

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources