The Use (and Misuse) of Phylogenetic Trees in Comparative Behavioral Analyses

A New Method for Genome-wide Marker Development and Genotyping Holds Great Promise for Molecular Primatology

(2013) Christina M. Bergey et al.   INTERNATIONAL JOURNAL OF PRIMATOLOGY

A Mitogenomic Phylogeny of Living Primates

(2013) Knut Finstermeier et al.   PLoS One

The Placental Mammal Ancestor and the Post-K-Pg Radiation of Placentals

(2013) M. A. O'Leary et al.   SCIENCE

Baboon phylogeny as inferred from complete mitochondrial genomes

(2012) Dietmar Zinner et al.   AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY

Coevolution of Facial Expression and Social Tolerance in Macaques

(2012) SETH D. DOBSON   AMERICAN JOURNAL OF PRIMATOLOGY

Unified modeling of gene duplication, loss, and coalescence using a locus tree

(2012) M. D. Rasmussen et al.   GENOME RESEARCH

Multilevel Societies in New World Primates? Flexibility May Characterize the Organization of Peruvian Red Uakaris (Cacajao calvus ucayalii)

(2012) Mark Bowler et al.   INTERNATIONAL JOURNAL OF PRIMATOLOGY

Evolution of Multilevel Social Systems in Nonhuman Primates and Humans

(2012) Cyril C. Grueter et al.   INTERNATIONAL JOURNAL OF PRIMATOLOGY

Concatenation and Concordance in the Reconstruction of Mouse Lemur Phylogeny: An Empirical Demonstration of the Effect of Allele Sampling in Phylogenetics

(2012) David W. Weisrock et al.   MOLECULAR BIOLOGY AND EVOLUTION

Species tree estimation for a deep phylogenetic divergence in the New World monkeys (Primates: Platyrrhini)

(2012) S. Ivan Perez et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Primate molecular phylogenetics in a genomic era

(2012) Nelson Ting et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Insights into hominid evolution from the gorilla genome sequence

(2012) Aylwyn Scally et al.   NATURE

Macroevolutionary Dynamics and Historical Biogeography of Primate Diversification Inferred from a Species Supermatrix

(2012) Mark S. Springer et al.   PLoS One

Evidence for a convergent slowdown in primate molecular rates and its implications for the timing of early primate evolution

(2012) M. E. Steiper et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model

(2012) S. Song et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Genetic evidence for dispersal by both sexes in the Central American Squirrel Monkey, Saimiri oerstedii citrinellus

(2011) M.E. Blair et al.   AMERICAN JOURNAL OF PRIMATOLOGY

Variations in sexual behavior among capuchin monkeys function for conspecific mate recognition: a phylogenetic analysis and a new hypothesis for female proceptivity in tufted capuchins

(2011) Luke J. Matthews   AMERICAN JOURNAL OF PRIMATOLOGY

Where have all the trees gone? The declining use of phylogenies in animal behaviour journals

(2011) J. Jordan Price et al.   ANIMAL BEHAVIOUR

How does cognition evolve? Phylogenetic comparative psychology

(2011) Evan L. MacLean et al.   ANIMAL COGNITION

The impact of taxon sampling on phylogenetic inference: a review of two decades of controversy

(2011) A. R. Nabhan et al.   BRIEFINGS IN BIOINFORMATICS

Group Composition of Guinea Baboons (Papio papio) at a Water Place Suggests a Fluid Social Organization

(2011) Annika Patzelt et al.   INTERNATIONAL JOURNAL OF PRIMATOLOGY

Genomic data reject the hypothesis of a prosimian primate clade

(2011) Natalie M. Jameson et al.   JOURNAL OF HUMAN EVOLUTION

Pleistocene diversification of living squirrel monkeys (Saimiri spp.) inferred from complete mitochondrial genome sequences

(2011) Kenneth L. Chiou et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeny of iguanian lizards inferred from 29 nuclear loci, and a comparison of concatenated and species-tree approaches for an ancient, rapid radiation

(2011) Ted M. Townsend et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Mitochondrial phylogeny of leaf monkeys (genus Presbytis, Eschscholtz, 1821) with implications for taxonomy and conservation

(2011) Dirk Meyer et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genetic Diversity and Population History of a Critically Endangered Primate, the Northern Muriqui (Brachyteles hypoxanthus)

(2011) Paulo B. Chaves et al.   PLoS One

Coalescent Histories on Phylogenetic Networks and Detection of Hybridization Despite Incomplete Lineage Sorting

(2011) Yun Yu et al.   SYSTEMATIC BIOLOGY

Taxon Sampling and the Optimal Rates of Evolution for Phylogenetic Inference

(2011) Jeffrey P. Townsend et al.   SYSTEMATIC BIOLOGY

A Molecular Phylogeny of Living Primates

(2011) Polina Perelman et al.   PLoS Genetics

Phylogenetic Targeting of Research Effort in Evolutionary Biology

(2010) Christian Arnold et al.   AMERICAN NATURALIST

BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis

(2010) Bret R. Larget et al.   BIOINFORMATICS

Phylogenetic representativeness: a new method for evaluating taxon sampling in evolutionary studies

(2010) Federico Plazzi et al.   BMC BIOINFORMATICS

Rapid progress on the vertebrate tree of life

(2010) Robert C Thomson et al.   BMC BIOLOGY

Reconstructing the ups and downs of primate brain evolution: implications for adaptive hypotheses and Homo floresiensis

(2010) Stephen H Montgomery et al.   BMC BIOLOGY

A maximum pseudo-likelihood approach for estimating species trees under the coalescent model

(2010) Liang Liu et al.   BMC EVOLUTIONARY BIOLOGY

Genetic history of an archaic hominin group from Denisova Cave in Siberia

(2010) David Reich et al.   NATURE

Mitochondrial Genome Sequences Effectively Reveal the Phylogeny of Hylobates Gibbons

(2010) Yi-Chiao Chan et al.   PLoS One

Apes Among the Tangled Branches of Human Origins

(2010) T. Harrison   SCIENCE

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

The Accuracy of Species Tree Estimation under Simulation: A Comparison of Methods

(2010) Adam D. Leaché et al.   SYSTEMATIC BIOLOGY

STEM: species tree estimation using maximum likelihood for gene trees under coalescence

(2009) Laura S. Kubatko et al.   BIOINFORMATICS

The biogeography of introgression in the critically endangered African monkey Rungwecebus kipunji

(2009) T. E. Roberts et al.   Biology Letters

Mitochondrial phylogeography of baboons (Papio spp.) – Indication for introgressive hybridization?

(2009) Dietmar Zinner et al.   BMC EVOLUTIONARY BIOLOGY

Estimating the phylogeny and divergence times of primates using a supermatrix approach

(2009) Helen J Chatterjee et al.   BMC EVOLUTIONARY BIOLOGY

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

Hybridization between mouse lemurs in an ecological transition zone in southern Madagascar

(2009) M. GLIGOR et al.   MOLECULAR ECOLOGY

Mitochondrial evidence for the hybrid origin of the kipunji, Rungwecebus kipunji (Primates: Papionini)

(2009) Andrew S. Burrell et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Patterns of macroevolution among Primates inferred from a supermatrix of mitochondrial and nuclear DNA

(2009) P-.H. Fabre et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Is the New Primate Genus Rungwecebus a Baboon?

(2009) Dietmar Zinner et al.   PLoS One

Successive radiations, not stasis, in the South American primate fauna

(2009) J. A. Hodgson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Estimating Species Trees: Methods of Phylogenetic Analysis When There Is Incongruence across Genes

(2009) L. Lacey Knowles   SYSTEMATIC BIOLOGY

Estimating Species Phylogenies Using Coalescence Times among Sequences

(2009) Liang Liu et al.   SYSTEMATIC BIOLOGY

Gene tree discordance, phylogenetic inference and the multispecies coalescent

(2009) James H. Degnan et al.   TRENDS IN ECOLOGY & EVOLUTION

BEST: Bayesian estimation of species trees under the coalescent model

(2008) L. Liu   BIOINFORMATICS

IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?

(2008) Scott V. Edwards   EVOLUTION

Mitogenomic relationships of placental mammals and molecular estimates of their divergences

(2008) Ulfur Arnason et al.   GENE

Molecular phylogeny and evolution of prosimians based on complete sequences of mitochondrial DNAs

(2008) Atsushi Matsui et al.   GENE

Additional molecular evidence strongly supports the distinction between the recently described African primate Rungwecebus kipunji (Cercopithecidae, Papionini) and Lophocebus

(2008) Link E. Olson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY

Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: A model

(2008) Chen Meng et al.   THEORETICAL POPULATION BIOLOGY