Evolutionary Histories of Transposable Elements in the Genome of the Largest Living Marsupial Carnivore, the Tasmanian Devil

Transposon Insertion Finder (TIF): a novel program for detection of de novo transpositions of transposable elements

(2014) Mariko Nakagome et al.   BMC BIOINFORMATICS

Reviving the Dead: History and Reactivation of an Extinct L1

(2014) Lei Yang et al.   PLoS Genetics

Horizontal transfer of OC1 transposons in the Tasmanian devil

(2013) Clement Gilbert et al.   BMC GENOMICS

The Next-Generation Sequencing Revolution and Its Impact on Genomics

(2013) Daniel C. Koboldt et al.   CELL

Ancestry of the Australian Termitivorous Numbat

(2013) Anja Zemann et al.   MOLECULAR BIOLOGY AND EVOLUTION

The impact of transposable elements in environmental adaptation

(2013) Elena Casacuberta et al.   MOLECULAR ECOLOGY

Widespread horizontal transfer of retrotransposons

(2013) A. M. Walsh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rates and patterns of great ape retrotransposition

(2013) F. Hormozdiari et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Comparative Genomics Approach to Understanding Transmissible Cancer in Tasmanian Devils

(2012) Janine E. Deakin et al.   Annual Review of Genomics and Human Genetics

RetroSeq: transposable element discovery from next-generation sequencing data

(2012) Thomas M. Keane et al.   BIOINFORMATICS

Expansion of CORE-SINEs in the genome of the Tasmanian devil

(2012) Maria A Nilsson et al.   BMC GENOMICS

Genome Sequencing and Analysis of the Tasmanian Devil and Its Transmissible Cancer

(2012) Elizabeth P. Murchison et al.   CELL

Active human retrotransposons: variation and disease

(2012) Dustin C Hancks et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

A non-LTR retroelement extinction in Spermophilus tridecemlineatus

(2012) Roy N. Platt II et al.   GENE

Next-generation sequencing and large genome assemblies

(2012) Joseph Henson et al.   PHARMACOGENOMICS

Functional characterization of piggyBat from the bat Myotis lucifugus unveils an active mammalian DNA transposon

(2012) R. Mitra et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative Analysis of Bat Genomes Provides Insight into the Evolution of Flight and Immunity

(2012) G. Zhang et al.   SCIENCE

LINE-1 Elements in Structural Variation and Disease

(2011) Christine R. Beck et al.   Annual Review of Genomics and Human Genetics

DNACLUST: accurate and efficient clustering of phylogenetic marker genes

(2011) Mohammadreza Ghodsi et al.   BMC BIOINFORMATICS

Retrofitting the Genome: L1 Extinction Follows Endogenous Retroviral Expansion in a Group of Muroid Rodents

(2011) I. K. Erickson et al.   JOURNAL OF VIROLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Dynamic interactions between transposable elements and their hosts

(2011) Henry L. Levin et al.   NATURE REVIEWS GENETICS

Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil)

(2011) W. Miller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development

(2011) Marilyn B Renfree et al.   GENOME BIOLOGY

Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery

(2010) Fereydoun Hormozdiari et al.   BIOINFORMATICS

A novel web-based TinT application and the chronology of the Primate Alu retroposon activity

(2010) Gennady Churakov et al.   BMC EVOLUTIONARY BIOLOGY

Limitations of next-generation genome sequence assembly

(2010) Can Alkan et al.   NATURE METHODS

Assemblies: the good, the bad, the ugly

(2010) Ewan Birney   NATURE METHODS

The Gypsy Database (GyDB) of mobile genetic elements: release 2.0

(2010) C. Llorens et al.   NUCLEIC ACIDS RESEARCH

Tracking Marsupial Evolution Using Archaic Genomic Retroposon Insertions

(2010) Maria A. Nilsson et al.   PLOS BIOLOGY

2× genomes - depth does matter

(2010) Michel C Milinkovitch et al.   GENOME BIOLOGY

Independent and parallel lateral transfer of DNA transposons in tetrapod genomes

(2009) Peter Novick et al.   GENE

The sequence and de novo assembly of the giant panda genome

(2009) Ruiqiang Li et al.   NATURE

Clonally transmissible cancers in dogs and Tasmanian devils

(2009) E P Murchison   ONCOGENE

Aggressive assembly of pyrosequencing reads with mates

(2008) Jason R. Miller et al.   BIOINFORMATICS

Retrotransposons Revisited: The Restraint and Rehabilitation of Parasites

(2008) John L. Goodier et al.   CELL

Loss of LINE-1 Activity in the Megabats

(2008) Michael A. Cantrell et al.   GENETICS

Newly discovered young CORE-SINEs in marsupial genomes

(2007) Maruo Munemasa et al.   GENE

Bov-B-mobilized SINEs in vertebrate genomes

(2007) Konstantin P. Gogolevsky et al.   GENE