Whole-Genome Resequencing of Experimental Populations Reveals Polygenic Basis of Egg-Size Variation inDrosophila melanogaster

Ecdysone signalling and ovarian development in insects: from stem cells to ovarian follicle formation

(2015) Xavier Belles et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Causes of natural variation in fitness: Evidence from studies ofDrosophilapopulations

(2015) Brian Charlesworth   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Hippo Pathway Regulates Homeostatic Growth of Stem Cell Niche Precursors in the Drosophila Ovary

(2015) Didem P. Sarikaya et al.   PLoS Genetics

Recent Selective Sweeps in North American Drosophila melanogaster Show Signatures of Soft Sweeps

(2015) Nandita R. Garud et al.   PLoS Genetics

SIMILARITIES AND DIFFERENCES IN ALTITUDINAL VERSUS LATITUDINAL VARIATION FOR MORPHOLOGICAL TRAITS INDROSOPHILA MELANOGASTER

(2014) Peter Klepsatel et al.   EVOLUTION

Systems Genomics of Metabolic Phenotypes in Wild-Type Drosophila melanogaster

(2014) Laura K. Reed et al.   GENETICS

miR-9a Minimizes the Phenotypic Impact of Genomic Diversity by Buffering a Transcription Factor

(2013) Justin J. Cassidy et al.   CELL

Promises and limitations of hitchhiking mapping

(2013) Sergey V Nuzhdin et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

A Rab10-Dependent Mechanism for Polarized Basement Membrane Secretion during Organ Morphogenesis

(2013) David W. Lerner et al.   DEVELOPMENTAL CELL

Massive Habitat-Specific Genomic Response in D. melanogaster Populations during Experimental Evolution in Hot and Cold Environments

(2013) Ray Tobler et al.   MOLECULAR BIOLOGY AND EVOLUTION

Gowinda: unbiased analysis of gene set enrichment for genome-wide association studies

(2012) R. Kofler et al.   BIOINFORMATICS

GENOMIC BASIS OF AGING AND LIFE-HISTORY EVOLUTION INDROSOPHILA MELANOGASTER

(2012) Silvia C. Remolina et al.   EVOLUTION

Investigating Natural Variation in Drosophila Courtship Song by the Evolve and Resequence Approach

(2012) T. L. Turner et al.   GENETICS

Adaptation ofDrosophilato a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles

(2012) PABLO OROZCO-terWENGEL et al.   MOLECULAR ECOLOGY

The Drosophila melanogaster Genetic Reference Panel

(2012) Trudy F. C. Mackay et al.   NATURE

Evidence of widespread selection on standing variation in Europe at height-associated SNPs

(2012) Michael C Turchin et al.   NATURE GENETICS

How does adaptation sweep through the genome? Insights from long-term selection experiments

(2012) M. K. Burke   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Experimental evolution

(2012) Tadeusz J. Kawecki et al.   TRENDS IN ECOLOGY & EVOLUTION

Fine-Scale Mapping of Natural Variation in Fly Fecundity Identifies Neuronal Domain of Expression and Function of an Aquaporin

(2012) Alan O. Bergland et al.   PLoS Genetics

The roles of cell size and cell number in determining ovariole number in Drosophila

(2011) Didem Pelin Sarikaya et al.   DEVELOPMENTAL BIOLOGY

Ecdysteroids affectDrosophilaovarian stem cell niche formation and early germline differentiation

(2011) Annekatrin König et al.   EMBO JOURNAL

Experimental selection of hypoxia-tolerant Drosophila melanogaster

(2011) D. Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Classic Selective Sweeps Were Rare in Recent Human Evolution

(2011) R. D. Hernandez et al.   SCIENCE

Adaptation to Climate Across the Arabidopsis thaliana Genome

(2011) A. M. Hancock et al.   SCIENCE

Coordinated Regulation of Niche and Stem Cell Precursors by Hormonal Signaling

(2011) Dana Gancz et al.   PLOS BIOLOGY

Population-Based Resequencing of Experimentally Evolved Populations Reveals the Genetic Basis of Body Size Variation in Drosophila melanogaster

(2011) Thomas L. Turner et al.   PLoS Genetics

At the crossroads of differentiation and proliferation: Precise control of cell-cycle changes by multiple signaling pathways in Drosophila follicle cells

(2010) Stephen Klusza et al.   BIOESSAYS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

The Genetics of Human Adaptation: Hard Sweeps, Soft Sweeps, and Polygenic Adaptation

(2010) Jonathan K. Pritchard et al.   CURRENT BIOLOGY

EVOLUTION AND INHERITANCE OF EARLY EMBRYONIC PATTERNING IN DROSOPHILA SIMULANS AND D. SECHELLIA

(2010) Susan E. Lott et al.   EVOLUTION

ARTIFICIAL SELECTION ON EGG SIZE PERTURBS EARLY PATTERN FORMATION IN DROSOPHILA MELANOGASTER

(2010) Cecelia M. Miles et al.   EVOLUTION

The Hippo-YAP pathway in organ size control and tumorigenesis: an updated version

(2010) B. Zhao et al.   GENES & DEVELOPMENT

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Whole-genome resequencing reveals loci under selection during chicken domestication

(2010) Carl-Johan Rubin et al.   NATURE

The developmental transcriptome of Drosophila melanogaster

(2010) Brenton R. Graveley et al.   NATURE

Genome-wide analysis of a long-term evolution experiment with Drosophila

(2010) Molly K. Burke et al.   NATURE

Adaptation – not by sweeps alone

(2010) Jonathan K. Pritchard et al.   NATURE REVIEWS GENETICS

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

Evidence that Adaptation in Drosophila Is Not Limited by Mutation at Single Sites

(2010) Talia Karasov et al.   PLoS Genetics

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Signals of recent positive selection in a worldwide sample of human populations

(2009) J. K. Pickrell et al.   GENOME RESEARCH

Generalized linear mixed models: a practical guide for ecology and evolution

(2009) Benjamin M. Bolker et al.   TRENDS IN ECOLOGY & EVOLUTION

Quantitative Trait Loci Affecting Phenotypic Plasticity and the Allometric Relationship of Ovariole Number and Thorax Length in Drosophila melanogaster

(2008) A. O. Bergland et al.   GENETICS

Egg size, embryonic development time and ovoviviparity in Drosophila species

(2008) T. A. MARKOW et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Divergence Times in Caenorhabditis and Drosophila Inferred from Direct Estimates of the Neutral Mutation Rate

(2008) A. D. Cutter   MOLECULAR BIOLOGY AND EVOLUTION