Recent Evolution inRattus norvegicusIs Shaped by Declining Effective Population Size

Fluctuating Selection Models and Mcdonald-Kreitman Type Analyses

(2014) Toni I. Gossmann et al.   PLoS One

Comparative Population Genomics of the Ejaculate in Humans and the Great Apes

(2013) Jeffrey M. Good et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inferring Demography from Runs of Homozygosity in Whole-Genome Sequence, with Correction for Sequence Errors

(2013) Iona M. MacLeod et al.   MOLECULAR BIOLOGY AND EVOLUTION

Contributions of Protein-Coding and Regulatory Change to Adaptive Molecular Evolution in Murid Rodents

(2013) Daniel L. Halligan et al.   PLoS Genetics

The effect of strand bias in Illumina short-read sequencing data

(2012) Yan Guo et al.   BMC GENOMICS

Adaptive Evolution and Effective Population Size in Wild House Mice

(2012) M. Phifer-Rixey et al.   MOLECULAR BIOLOGY AND EVOLUTION

Nuclear Gene Variation in Wild Brown Rats

(2012) Rob W. Ness et al.   G3-Genes Genomes Genetics

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Pervasive Adaptive Protein Evolution Apparent in Diversity Patterns around Amino Acid Substitutions in Drosophila simulans

(2011) Shmuel Sattath et al.   PLoS Genetics

Genome Wide Analyses Reveal Little Evidence for Adaptive Evolution in Many Plant Species

(2010) T. I. Gossmann et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Linkage Disequilibrium Between Loci With Unknown Phase

(2009) A. R. Rogers et al.   GENETICS

Estimating the Rate of Adaptive Molecular Evolution in the Presence of Slightly Deleterious Mutations and Population Size Change

(2009) A. Eyre-Walker et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pervasive Hitchhiking at Coding and Regulatory Sites in Humans

(2009) James J. Cai et al.   PLoS Genetics

Effect of the assignment of ancestral CpG state on the estimation of nucleotide substitution rates in mammals

(2008) Daniel J Gaffney et al.   BMC EVOLUTIONARY BIOLOGY

Dating of divergences within the Rattus genus phylogeny using whole mitochondrial genomes

(2008) Judith H. Robins et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION