Integrated Transcriptomic and Proteomic Analysis of the Global Response of Synechococcus to High Light Stress

Glycoprotein Biomarker Panel for Pancreatic Cancer Discovered by Quantitative Proteomics Analysis

(2014) Song Nie et al.   JOURNAL OF PROTEOME RESEARCH

Identification of Proteins Involved in Human Sperm Motility Using High-Throughput Differential Proteomics

(2014) Alexandra Amaral et al.   JOURNAL OF PROTEOME RESEARCH

Daily Rhythms in the CyanobacteriumSynechococcus elongatusProbed by High-resolution Mass Spectrometry–based Proteomics Reveals a Small Defined Set of Cyclic Proteins

(2014) Ana C. L. Guerreiro et al.   MOLECULAR & CELLULAR PROTEOMICS

Global Phosphoproteomic Analysis Reveals Diverse Functions of Serine/Threonine/Tyrosine Phosphorylation in the Model Cyanobacterium Synechococcus sp. Strain PCC 7002

(2013) Ming-kun Yang et al.   JOURNAL OF PROTEOME RESEARCH

Variation and genetic control of protein abundance in humans

(2013) Linfeng Wu et al.   NATURE

Acclimation of the Global Transcriptome of the Cyanobacterium Synechococcus sp. Strain PCC 7002 to Nutrient Limitations and Different Nitrogen Sources

(2012) Marcus Ludwig et al.   Frontiers in Microbiology

Synechococcus sp. Strain PCC 7002 Transcriptome: Acclimation to Temperature, Salinity, Oxidative Stress, and Mixotrophic Growth Conditions

(2012) Marcus Ludwig et al.   Frontiers in Microbiology

Strategies for psbA gene expression in cyanobacteria, green algae and higher plants: From transcription to PSII repair

(2011) Paula Mulo et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Review Application of RNA-seq to reveal the transcript profile in bacteria

(2011) A.C. Pinto et al.   GENETICS AND MOLECULAR RESEARCH

Improving SRM Assay Development: A Global Comparison between Triple Quadrupole, Ion Trap, and Higher Energy CID Peptide Fragmentation Spectra

(2011) Erik L. de Graaf et al.   JOURNAL OF PROTEOME RESEARCH

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Transcription Profiling of the Model Cyanobacterium Synechococcus sp. Strain PCC 7002 by Next-Gen (SOLiD™) Sequencing of cDNA

(2011) Marcus Ludwig et al.   Frontiers in Microbiology

Functional Characterization and Quantification of the Alternative PsbA Copies inThermosynechococcus elongatusand Their Role in Photoprotection

(2010) Julia Sander et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Acetylation of Metabolic Enzymes Coordinates Carbon Source Utilization and Metabolic Flux

(2010) Q. Wang et al.   SCIENCE

ApcD is necessary for efficient energy transfer from phycobilisomes to photosystem I and helps to prevent photoinhibition in the cyanobacterium Synechococcus sp. PCC 7002

(2009) Chunxia Dong et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Structure and Complexity of a Bacterial Transcriptome

(2009) K. D. Passalacqua et al.   JOURNAL OF BACTERIOLOGY

Global signatures of protein and mRNA expression levels

(2009) Raquel de Sousa Abreu et al.   Molecular BioSystems

Distinct roles of CpcG1-phycobilisome and CpcG2-phycobilisome in state transitions in a cyanobacterium Synechocystis sp. PCC 6803

(2009) Kumiko Kondo et al.   PHOTOSYNTHESIS RESEARCH

Photorespiratory 2-phosphoglycolate metabolism and photoreduction of O2 cooperate in high-light acclimation of Synechocystis sp. strain PCC 6803

(2009) Claudia Hackenberg et al.   PLANTA

Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing

(2009) D. R. Yoder-Himes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions

(2009) C. Choudhary et al.   SCIENCE

Low-Oxygen Induction of Normally CrypticpsbAGenes in Cyanobacteria†

(2008) Tina C. Summerfield et al.   BIOCHEMISTRY

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

The High Light-Inducible Polypeptides Stabilize Trimeric Photosystem I Complex under High Light Conditions in Synechocystis PCC 6803

(2008) Q. Wang et al.   PLANT PHYSIOLOGY