Simultaneous Enrichment of Plasma Soluble and Extracellular Vesicular Glycoproteins Using Prolonged Ultracentrifugation-Electrostatic Repulsion-hydrophilic Interaction Chromatography (PUC-ERLIC) Approach

Microvesicles as Cell–Cell Messengers in Cardiovascular Diseases

(2014) Xavier Loyer et al.   CIRCULATION RESEARCH

Evaluation of the Effect of Trypsin Digestion Buffers on Artificial Deamidation

(2014) Piliang Hao et al.   JOURNAL OF PROTEOME RESEARCH

Polarized release of T-cell-receptor-enriched microvesicles at the immunological synapse

(2014) Kaushik Choudhuri et al.   NATURE

Glycoproteomic Study Reveals Altered Plasma Proteins Associated with HIV Elite Suppressors

(2014) Weiming Yang et al.   Theranostics

Fine Tuning of Proteomic Technologies to Improve Biological Findings: Advancements in 2011–2013

(2013) Janice Mayne et al.   ANALYTICAL CHEMISTRY

MicroRNA-146a is a therapeutic target and biomarker for peripartum cardiomyopathy

(2013) Julie Halkein et al.   JOURNAL OF CLINICAL INVESTIGATION

Accurate Identification of Deamidated Peptides in Global Proteomics Using a Quadrupole Orbitrap Mass Spectrometer

(2013) Angelito I. Nepomuceno et al.   JOURNAL OF PROTEOME RESEARCH

Assessment of reproducibility in depletion and enrichment workflows for plasma proteomics using label-free quantitative data-independent LC-MS

(2013) Amirmansoor Hakimi et al.   PROTEOMICS

Multiplexed MRM-based quantitation of candidate cancer biomarker proteins in undepleted and non-enriched human plasma

(2013) Andrew J. Percy et al.   PROTEOMICS

Roles of exosomes and microvesicles in disease pathogenesis

(2012) Shin-ichiro Ohno et al.   ADVANCED DRUG DELIVERY REVIEWS

Comparison of standard- and nano-flow liquid chromatography platforms for MRM-based quantitation of putative plasma biomarker proteins

(2012) Andrew J. Percy et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Tumor-derived microvesicles: shedding light on novel microenvironment modulators and prospective cancer biomarkers

(2012) C. D'Souza-Schorey et al.   GENES & DEVELOPMENT

Circulating microRNAs in exosomes indicate hepatocyte injury and inflammation in alcoholic, drug-induced, and inflammatory liver diseases

(2012) Shashi Bala et al.   HEPATOLOGY

Large-scale Identification of N-Glycosylated Proteins of Mouse Tissues and Construction of a Glycoprotein Database, GlycoProtDB

(2012) Hiroyuki Kaji et al.   JOURNAL OF PROTEOME RESEARCH

Standardized Protocols for Quality Control of MRM-based Plasma Proteomic Workflows

(2012) Andrew J. Percy et al.   JOURNAL OF PROTEOME RESEARCH

Proteomic analysis of microvesicles from plasma of healthy donors reveals high individual variability

(2012) Patricia Bastos-Amador et al.   Journal of Proteomics

Mapping N-Glycosylation Sites across Seven Evolutionarily Distant Species Reveals a Divergent Substrate Proteome Despite a Common Core Machinery

(2012) Dorota F. Zielinska et al.   MOLECULAR CELL

Protein typing of circulating microvesicles allows real-time monitoring of glioblastoma therapy

(2012) Huilin Shao et al.   NATURE MEDICINE

Recent advances in monolithic column-based boronate-affinity chromatography

(2012) Hengye Li et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

Integrated Sample Pretreatment System for N-Linked Glycosylation Site Profiling with Combination of Hydrophilic Interaction Chromatography and PNGase F Immobilized Enzymatic Reactor via a Strong Cation Exchange Precolumn

(2011) Yanyan Qu et al.   ANALYTICAL CHEMISTRY

Identification of Low-Abundance Cancer Biomarker Candidate TIMP1 from Serum with Lectin Fractionation and Peptide Affinity Enrichment by Ultrahigh-Resolution Mass Spectrometry

(2011) Yeong Hee Ahn et al.   ANALYTICAL CHEMISTRY

Endothelial progenitor cell transplantation decreases lymphangiogenesis and adverse myocardial remodeling in a mouse model of acute myocardial infarction

(2011) Jae-Hyeong Park et al.   EXPERIMENTAL AND MOLECULAR MEDICINE

Chemokine-Containing Exosomes Are Released from Heat-Stressed Tumor Cells via Lipid Raft-Dependent Pathway and Act as Efficient Tumor Vaccine

(2011) T. Chen et al.   JOURNAL OF IMMUNOLOGY

Characterization of the Human Submandibular/Sublingual Saliva Glycoproteome Using Lectin Affinity Chromatography Coupled to Multidimensional Protein Identification Technology

(2011) Mireya Gonzalez-Begne et al.   JOURNAL OF PROTEOME RESEARCH

ExoCarta 2012: database of exosomal proteins, RNA and lipids

(2011) S. Mathivanan et al.   NUCLEIC ACIDS RESEARCH

The good, the bad, the ugly: Validating the mass spectrometric analysis of modified peptides

(2011) Florian Beck et al.   PROTEOMICS

Unidirectional transfer of microRNA-loaded exosomes from T cells to antigen-presenting cells

(2011) María Mittelbrunn et al.   Nature Communications

High-abundance proteins depletion for serum proteomic analysis: concomitant removal of non-targeted proteins

(2010) Elisa Bellei et al.   AMINO ACIDS

A lectin affinity workflow targeting glycosite-specific, cancer-related carbohydrate structures in trypsin-digested human plasma

(2010) Penelope M. Drake et al.   ANALYTICAL BIOCHEMISTRY

Precision Mapping of an In Vivo N-Glycoproteome Reveals Rigid Topological and Sequence Constraints

(2010) Dorota F. Zielinska et al.   CELL

Optimizing Performance of Glycopeptide Capture for Plasma Proteomics

(2010) Frode S. Berven et al.   JOURNAL OF PROTEOME RESEARCH

Simultaneous Characterization of Glyco- and Phosphoproteomes of Mouse Brain Membrane Proteome with Electrostatic Repulsion Hydrophilic Interaction Chromatography

(2010) Huoming Zhang et al.   MOLECULAR & CELLULAR PROTEOMICS

Selective enrichment of sialic acid–containing glycopeptides using titanium dioxide chromatography with analysis by HILIC and mass spectrometry

(2010) Giuseppe Palmisano et al.   Nature Protocols

Software Tool for Researching Annotations of Proteins: Open-Source Protein Annotation Software with Data Visualization

(2009) Vivek N. Bhatia et al.   ANALYTICAL CHEMISTRY

Exosomes: proteomic insights and diagnostic potential

(2009) Richard J Simpson et al.   Expert Review of Proteomics

The dynamic range problem in the analysis of the plasma proteome

(2009) Glen L. Hortin et al.   Journal of Proteomics

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Shedding microvesicles: artefacts no more

(2009) Emanuele Cocucci et al.   TRENDS IN CELL BIOLOGY

Proteomic profiling of human plasma exosomes identifies PPARγ as an exosome-associated protein

(2008) Christopher Looze et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

AmiGO: online access to ontology and annotation data

(2008) Seth Carbon et al.   BIOINFORMATICS

High-Abundance Polypeptides of the Human Plasma Proteome Comprising the Top 4 Logs of Polypeptide Abundance

(2008) G. L. Hortin et al.   CLINICAL CHEMISTRY

Role of microparticles in atherothrombosis

(2008) A. S. Leroyer et al.   JOURNAL OF INTERNAL MEDICINE

Glycoproteomics of Plasma Based on Narrow Selectivity Lectin Affinity Chromatography

(2008) Kwanyoung Jung et al.   JOURNAL OF PROTEOME RESEARCH

Assessment of lectin and HILIC based enrichment protocols for characterization of serum glycoproteins by mass spectrometry

(2008) Cosima D. Calvano et al.   Journal of Proteomics

Tissue factor-bearing microparticles derived from tumor cells: impact on coagulation activation

(2008) M. DAVILA et al.   JOURNAL OF THROMBOSIS AND HAEMOSTASIS

Glioblastoma microvesicles transport RNA and proteins that promote tumour growth and provide diagnostic biomarkers

(2008) Johan Skog et al.   NATURE CELL BIOLOGY

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

Glycosylation Site Analysis of Human Platelets by Electrostatic Repulsion Hydrophilic Interaction Chromatography

(2008) Urs Lewandrowski et al.   Clinical Proteomics

Electrostatic Repulsion Hydrophilic Interaction Chromatography for Isocratic Separation of Charged Solutes and Selective Isolation of Phosphopeptides

(2007) Andrew J. Alpert   ANALYTICAL CHEMISTRY