Advances in the Techniques for the Prediction of microRNA Targets

Site identification in high-throughput RNA–protein interaction data

(2012) Philip J. Uren et al.   BIOINFORMATICS

Identifying miRNAs, targets and functions

(2012) B. Liu et al.   BRIEFINGS IN BIOINFORMATICS

MicroRNA Genes and Their Target 3′-Untranslated Regions Are Infrequently Somatically Mutated in Ovarian Cancers

(2012) Georgina L. Ryland et al.   PLoS One

A Least Angle Regression Model for the Prediction of Canonical and Non-Canonical miRNA-mRNA Interactions

(2012) Julia C. Engelmann et al.   PLoS One

miRTar: an integrated system for identifying miRNA-target interactions in human

(2011) Justin Hsu et al.   BMC BIOINFORMATICS

Understanding MicroRNA Regulation: A computational perspective

(2011) Dong Yue et al.   IEEE SIGNAL PROCESSING MAGAZINE

doRiNA: a database of RNA interactions in post-transcriptional regulation

(2011) Gerd Anders et al.   NUCLEIC ACIDS RESEARCH

Assessing the Utility of Thermodynamic Features for microRNA Target Prediction under Relaxed Seed and No Conservation Requirements

(2011) Parawee Lekprasert et al.   PLoS One

Computational Prediction of Intronic microRNA Targets using Host Gene Expression Reveals Novel Regulatory Mechanisms

(2011) M. Hossein Radfar et al.   PLoS One

CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins

(2010) M. Khorshid et al.   NUCLEIC ACIDS RESEARCH

starBase: a database for exploring microRNA–mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data

(2010) Jian-Hua Yang et al.   NUCLEIC ACIDS RESEARCH

Computational methods to identify miRNA targets

(2010) Molly Hammell   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Accurate microRNA target prediction correlates with protein repression levels

(2009) Manolis Maragkakis et al.   BMC BIOINFORMATICS

Survey of Computational Algorithms for MicroRNA Target Prediction

(2009) Dong Yue et al.   CURRENT GENOMICS

DIANA-microT web server: elucidating microRNA functions through target prediction

(2009) M. Maragkakis et al.   NUCLEIC ACIDS RESEARCH

Most mammalian mRNAs are conserved targets of microRNAs

(2008) R. C. Friedman et al.   GENOME RESEARCH

In silicoprediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)

(2008) J. Singh et al.   INSECT MOLECULAR BIOLOGY

mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein–enriched transcripts

(2008) Molly Hammell et al.   NATURE METHODS