Article
Biochemistry & Molecular Biology
Yongguang Zhang, Dongya Cui, Miaohui Huang, Yongwei Zheng, Baijiao Zheng, Liling Chen, Qi Chen
Summary: The protein NONO is a multifunctional nuclear protein that regulates transcriptional regulation, mRNA splicing, and DNA repair. This study shows that NONO has a critical role in B-cell development and B-cell activation. Deletion of NONO impairs early B-cell development and B-cell maturation, as well as the activation of pathways involved in B-cell activation, such as ERK, AKT, and NF-kappa B.
Article
Cell Biology
Zheng Cao, Duo Xu, Jeffrey Harding, Wenting Chen, Xiangsheng Liu, Zi Wang, Lan Wang, Tong Qi, Shilin Chen, Xinheng Guo, Irvin S. Y. Chen, Jimin Guo, Yunfeng Lu, Jing Wen
Summary: Cancer immunotherapy is limited by tumor immunosuppression caused by excessive lactate production. This study presents a nanocapsule enzyme therapeutic approach based on lactate oxidase, which reduces lactate levels and releases immunostimulatory hydrogen peroxide, improving the efficacy of immune checkpoint blockade treatment.
SCIENCE TRANSLATIONAL MEDICINE
(2023)
Article
Biochemical Research Methods
Adrian L. Hauber, Marcus Rosenblatt, Jens Timmer
Summary: Ordinary differential equations are commonly used for mathematical modeling in biological systems. Identifying cell-type specific mechanisms is crucial in building useful models and understanding biological processes. Existing regularization techniques are inconsistent when analyzing more than two cell types. To address this, the paper proposes incorporating the clustered LASSO into ordinary differential equation modeling by penalizing pairwise differences of fold-change parameters. This approach renders the results independent of the reference cell type. The paper demonstrates the performance of the method using realistic biological models and synthetic data, and also applies it to published biological models with experimental data.
PLOS COMPUTATIONAL BIOLOGY
(2023)
Review
Cell Biology
Tong Zhang, Jianxuan Sun, Jiali Cheng, Wei Yin, Jingwen Li, Heather Miller, Andres A. Herrada, Heng Gu, Hongmei Song, Yan Chen, Quan Gong, Chaohong Liu
Summary: Ubiquitinases are crucial enzymes that modify target proteins through ubiquitination, playing important roles in regulating protein degradation, localization, and function. B lymphocytes differentiate into plasma cells to produce antibodies, participating in humoral immune functions, with ubiquitination playing important roles in B lymphocyte development and function.
JOURNAL OF LEUKOCYTE BIOLOGY
(2021)
Article
Multidisciplinary Sciences
Koen Debackere, Lukas Marcelis, Sofie Demeyer, Marlies Vanden Bempt, Nicole Mentens, Olga Gielen, Kris Jacobs, Michael Broux, Gregor Verhoef, Lucienne Michaux, Carlos Graux, Iwona Wlodarska, Philippe Gaulard, Laurence de Leval, Thomas Tousseyn, Jan Cools, Daan Dierickx
Summary: This study identifies two fusion transcripts that activate T cell receptor complex signaling and confer therapeutic vulnerability in PTCL-NOS, contributing to the understanding of this poorly characterized subgroup of PTCL at the genetic level.
NATURE COMMUNICATIONS
(2021)
Article
Cell Biology
Weihong Gu, Darling Melany C. Madrid, Sebastian Joyce, John P. Driver
Summary: In this study, single-cell RNA sequencing was used to create a cell atlas of the early-adolescent pig thymus, revealing conserved features and species-specific differences compared to human thymocytes. The study also identified unconventional T cell types with gene expression profiles associated with innate effector functions and characterized the functional diversity of pig iNKT cells. These findings provide important insights into pig T cell development.
Article
Virology
Jayeshbhai Chaudhari, Chia-Sin Liew, Jean-Jack M. Riethoven, Sarah Sillman, Hiep L. X. Vu
Summary: By comparing the host transcriptional response between PRRSV-infected PAMs and uninfected but exposed bystander PAMs, it was found that inflammatory cytokines, interferon-stimulated genes, and antiviral genes were highly upregulated in infected cells. Additionally, negative immune regulators and T-cell exhaustion markers were also significantly upregulated in infected PAMs compared to bystander cells.
JOURNAL OF VIROLOGY
(2021)
Article
Nanoscience & Nanotechnology
Xinghan Liu, Yujun Xu, Lijie Yin, Yayi Hou, Shuli Zhao
Summary: The study demonstrates that R-M@CS-PAA NPs can exert anti-tumor effects by promoting the infiltration of M1 macrophages and CD8(+) T cells, reducing the number of suppressive immune cells in the tumor microenvironment.
INTERNATIONAL JOURNAL OF NANOMEDICINE
(2021)
Review
Immunology
Thomas Baranek, Carolina de Amat Herbozo, Thierry Mallevaey, Christophe Paget
Summary: Invariant natural killer T (iNKT) cells are important biomarkers and targets for immunotherapy. Recent studies have revealed the heterogeneity of iNKT cells and challenged our understanding of their development and differentiation. A new model is proposed to explain the classification and differentiation of iNKT cells.
TRENDS IN IMMUNOLOGY
(2022)
Article
Genetics & Heredity
Ninghan Zhang, Jiawen Xu, Rong Wang, Ting Pan, Huanxin Zhang, Lingling Yin, Yao Yao, Linyan Xu, Shengyun Zhu, Qingyun Wu, Zhenyu Li, Xuejiao Liu, Kailin Xu, Mingshan Niu
Summary: The study demonstrates that CARMA1 is highly expressed in T-ALL cells and correlated with prognosis. Knockdown of CARMA1 only impacts the growth and proliferation of SIL-TAL1 fusion gene-negative T-ALL cells.
JOURNAL OF MOLECULAR MEDICINE-JMM
(2021)
Article
Medicine, Research & Experimental
Jun Xiao, Fei Sun, Ya-Nan Wang, Bo Liu, Peng Zhou, Fa-Xi Wang, Hai-Feng Zhou, Yue Ge, Tian-Tian Yue, Jia-Hui Luo, Chun-Liang Yang, Shan-Jie Rong, Ze-Zhong Xiong, Sheng Ma, Qi Zhang, Yang Xun, Chun-Guang Yang, Yang Luan, Shao-Gang Wang, Cong-Yi Wang, Zhi-Hua Wang
Summary: The role of tumor-associated macrophages (TAMs) and the regulatory mechanisms of macrophage activation in prostate cancer (PCa) are poorly understood. In this study, it was found that PCa growth in mice with macrophage-specific Ubc9 deficiency was suppressed due to enhanced CD8+ T cell response. The study also identified STAT4 as a crucial UBC9-mediated SUMOylation target, with K350 as the major modification site. Furthermore, inhibition of UBC9 with the inhibitor 2-D08 increased the antitumor effect of TAMs and expression of PD-1 on CD8+ T cells, providing valuable insights for cancer therapy.
JOURNAL OF CLINICAL INVESTIGATION
(2023)
Article
Biochemical Research Methods
Fatemeh Ghorbani, Mohammadreza Abdihaji, Mehryar Habibi Roudkenar, Ammar Ebrahimi
Summary: This study developed a novel cell-based biosensor using the NF-kappa B inducible promoter for residual detergent detection and evaluation of cytocompatibility of decellularized tissues. The biosensor showed high sensitivity and stability, detecting detergent at low concentrations and providing important information on transplant cell viability.
ACS SYNTHETIC BIOLOGY
(2021)
Article
Chemistry, Medicinal
Chao Zhu, Shuang Wen, Junyong Li, Hongyu Meng, Junzhe Zhang, Kuo Zhao, Ling Wang, Yingze Zhang
Summary: The study demonstrated that Fingolimod exerts beneficial effects in collagen-induced arthritis (CIA) mice by inhibiting the recruitment of CD4(+) T lymphocytes to the affected joints. Additionally, Fingolimod inhibits TNF-alpha-induced inflammation by suppressing the AKT/PI3K/NF-kappa B signaling pathway in MH7A cells.
DRUG DESIGN DEVELOPMENT AND THERAPY
(2021)
Article
Biochemistry & Molecular Biology
Yuqi Zhu, Zhengtao Jiang, Lin Liu, Xinyi Yang, Min Li, Yipeng Cheng, Jianqing Xu, Chunhua Yin, Huanzhang Zhu
Summary: This study found that a compound called Scopoletin can reactivate latent HIV-1 infection and revealed its underlying mechanism. Using a Jurkat T cell model of HIV-1 latency, it was shown that Scopoletin can activate latent infection similarly to Prostratin in a dose- and time-dependent manner. The study also found that Scopoletin-induced HIV-1 reactivation involves the nuclear factor kappa B (NF-?B) signaling pathway. Overall, the findings suggest that Scopoletin has the potential to reactivate latent HIV-1 without causing global T-cell activation, making it a promising treatment option for anti-HIV-1 latency strategies.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Article
Biochemistry & Molecular Biology
Lei Xu, Yangfan Ye, Zeqiang Tao, Tian Wang, Yutian Wei, Wanzhi Cai, Xin Wan, Pengzhan Zhao, Wei Gu, Bin Gu, Liuchao Zhang, Yufei Tian, Ning Liu, Yiming Tu, Jing Ji
Summary: This study elucidated the role of MLPH in GBM radiation resistance, showing that MLPH promotes radiotherapy resistance by regulating the NF-kappa B pathway. Additionally, O-GlcNAcylation of MLPH protects it from degradation and stabilizes its presence in cells. These findings provide insights into a potential mechanism of GBM radiation resistance and suggest a therapeutic strategy for GBM treatment.
Article
Biochemistry & Molecular Biology
Hisaaki Shinohara, Tomoharu Yasuda, Tomohiro Kurosaki
Article
Cell Biology
Hisaaki Shinohara, Takeshi Nagashima, Marilia I. Cascalho, Tomohiro Kurosaki
Article
Cell Biology
Hisaaki Shinohara, Tomohiro Kurosaki
IMMUNOLOGY AND CELL BIOLOGY
(2016)
Article
Immunology
Akiko Hashimoto-Tane, Machie Sakuma, Hiroshi Ike, Tadashi Yokosuka, Yayoi Kimura, Osamu Ohara, Takashi Saito
JOURNAL OF EXPERIMENTAL MEDICINE
(2016)
Article
Multidisciplinary Sciences
Keiko Morimoto, Yoshihiro Baba, Hisaaki Shinohara, Sujin Kang, Satoshi Nojima, Tetsuya Kimura, Daisuke Ito, Yuji Yoshida, Yohei Maeda, Hana Sarashina-Kida, Masayuki Nishide, Takashi Hosokawa, Yasuhiro Kato, Yoshitomo Hayama, Yuhei Kinehara, Tatsusada Okuno, Hyota Takamatsu, Toru Hirano, Yoshihito Shima, Masashi Narazaki, Tomohiro Kurosaki, Toshihiko Toyofuku, Atsushi Kumanogoh
SCIENTIFIC REPORTS
(2016)
Article
Multidisciplinary Sciences
Hisaaki Shinohara, Kentaro Inoue, Noriko Yumoto, Takeshi Nagashima, Mariko Okada-Hatakeyama
SCIENTIFIC REPORTS
(2016)
Article
Multidisciplinary Sciences
Keiro Shirotani, Yuma Hori, Ryohei Yoshizaki, Eri Higuchi, Marco Colonna, Takashi Saito, Shoko Hashimoto, Takashi Saito, Takaomi C. Saido, Nobuhisa Iwata
SCIENTIFIC REPORTS
(2019)
Article
Cell Biology
Torben Gehring, Tabea Erdmann, Marco Rahm, Carina Gras, Andrew Flatley, Thomas J. O'Neill, Simone Woods, Isabel Meininger, Ozge Karayel, Kerstin Kutzner, Michael Grau, Hisaaki Shinohara, Katja Lammens, Regina Feederle, Stefanie M. Hauck, Georg Lenz, Daniel Krappmann
Article
Biochemistry & Molecular Biology
Sufeng Chiang, Hisaaki Shinohara, Jia-Hsin Huang, Huai-Kuang Tsai, Mariko Okada
Article
Cell Biology
Hiroki Michida, Hiroaki Imoto, Hisaaki Shinohara, Noriko Yumoto, Masahide Seki, Mana Umeda, Tetsutaro Hayashi, Itoshi Nikaido, Takeya Kasukawa, Yutaka Suzuki, Mariko Okada-Hatakeyama
Article
Genetics & Heredity
Johannes N. Wibisana, Takehiko Inaba, Hisaaki Shinohara, Noriko Yumoto, Tetsutaro Hayashi, Mana Umeda, Masashi Ebisawa, Itoshi Nikaido, Yasushi Sako, Mariko Okada
Summary: The NF-kappa B transcription factor plays a crucial role in cell fate determination and is involved in the activation of super-enhancers. This study investigates the characteristics of NF-kappa B-mediated super-enhancer activity and suggests that NF-kappa B super-enhancers play an important role in the transcriptional regulation of B cells possibly through liquid condensate formation consisting of macromolecular interactions.
Article
Multidisciplinary Sciences
Takayuki Imanishi, Midori Unno, Natsumi Yoneda, Yasutaka Motomura, Miho Mochizuki, Takaharu Sasaki, Manolis Pasparakis, Takashi Saito
Summary: This study reveals that T cell-specific deficiency of RIPK1 in mice leads to premature T cell senescence and age-related diseases, resulting in premature death. RIPK1 deficiency activates mTORC1, leading to enhanced cytokine production, induction of senescence-related genes, and increased caspase-3/7 activation. The impaired phenotypes and responses are restored by combined deficiency of RIPK3 and caspase-8 inhibition.
Article
Cell Biology
Kentaro Inoue, Tomoharu Yasuda, Yoshihiro Baba, Tadashi Yamamoto, Tomohiro Kurosaki, Hisaaki Shinohara
Summary: In this study, the influence of TRAF6 on CBM formation and TAK1 and IKK activities was investigated using TRAF6-deficient DT40 B cells. Mathematical model analysis showed that TRAF6 contributes to the positive regulation of IKK activation via TAK1, and negatively regulates CARMA1 binding to Bcl10.
Meeting Abstract
Immunology
K. Morimoto, Y. Baba, H. Shinohara, T. Kurosaki, T. Toyofuku, A. Kumanogoh
EUROPEAN JOURNAL OF IMMUNOLOGY
(2016)
Article
Mathematical & Computational Biology
Kentaro Inoue, Hisaaki Shinohara, Marcelo Behar, Noriko Yumoto, Gouhei Tanaka, Alexander Hoffmann, Kazuyuki Aihara, Mariko Okada-Hatakeyama
NPJ SYSTEMS BIOLOGY AND APPLICATIONS
(2016)