Viral CD8 T cell epitope nucleotide composition shows evidence of short- and long-term evolutionary strategies

Immune-Induced Evolutionary Selection Focused on a Single Reading Frame in Overlapping Hepatitis B Virus Proteins

(2011) Y. Maman et al.   JOURNAL OF VIROLOGY

MHC-I prediction using a combination of T cell epitopes and MHC-I binding peptides

(2010) Tal Vider-Shalit et al.   JOURNAL OF IMMUNOLOGICAL METHODS

Viral Mutation Rates

(2010) R. Sanjuan et al.   JOURNAL OF VIROLOGY

Viruses selectively mutate their CD8+ T-cell epitopes--a large-scale immunomic analysis

(2009) T. Vider-Shalit et al.   BIOINFORMATICS

The Immune Epitope Database 2.0

(2009) Randi Vita et al.   NUCLEIC ACIDS RESEARCH

General Rules for Optimal Codon Choice

(2009) Ruth Hershberg et al.   PLoS Genetics

Selection on Codon Bias

(2008) Ruth Hershberg et al.   Annual Review of Genetics

Precise score for the prediction of peptides cleaved by the proteasome

(2008) Ido Ginodi et al.   BIOINFORMATICS

Experimental evolution of plant RNA viruses

(2008) S F Elena et al.   HEREDITY

The Specificity and Polymorphism of the MHC Class I Prevents the Global Adaptation of HIV-1 to the Monomorphic Proteasome and TAP

(2008) Boris Schmid et al.   PLoS One

Frequent Toggling between Alternative Amino Acids Is Driven by Selection in HIV-1

(2008) Wayne Delport et al.   PLoS Pathogens