Random effect estimation of time-varying factors in Stock Synthesis

Using a recruitment-linked multispecies stock assessment model to estimate common trends in recruitment for US West Coast groundfishes

(2013) JT Thorson et al.   MARINE ECOLOGY PROGRESS SERIES

Strategies for fitting nonlinear ecological models in R, AD Model Builder, and BUGS

(2013) Benjamin M. Bolker et al.   Methods in Ecology and Evolution

Selection and estimation of sequential catch-at-age models

(2012) Gudmundur Gudmundsson et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Increasing biological realism of fisheries stock assessment: towards hierarchical Bayesian methods

(2012) Anna Kuparinen et al.   ENVIRONMENTAL REVIEWS

A comparison of stock assessment uncertainty estimates using maximum likelihood and Bayesian methods implemented with the same model framework

(2012) Ian J. Stewart et al.   FISHERIES RESEARCH

A review of integrated analysis in fisheries stock assessment

(2012) Mark N. Maunder et al.   FISHERIES RESEARCH

Stock synthesis: A biological and statistical framework for fish stock assessment and fishery management

(2012) Richard D. Methot et al.   FISHERIES RESEARCH

Adjusting for bias due to variability of estimated recruitments in fishery assessment models

(2011) Richard D. Methot et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Interval programming models for matrix games with interval payoffs

(2010) Deng-Feng Li et al.   OPTIMIZATION METHODS & SOFTWARE

Shared challenges and common ground for Bayesian and classical analysis of hierarchical statistical models

(2009) Perry de Valpine   ECOLOGICAL APPLICATIONS

Likelihood ridges and multimodality in population growth rate models

(2009) Leo Polansky et al.   ECOLOGY

Testing different methods of incorporating climate data into the assessment of US West Coast sablefish

(2009) M. J. Schirripa et al.   ICES JOURNAL OF MARINE SCIENCE

Generalized linear mixed models: a practical guide for ecology and evolution

(2009) Benjamin M. Bolker et al.   TRENDS IN ECOLOGY & EVOLUTION