4.6 Article

Mitochondrial DNA population structure of the scalloped lobster Panulirus homarus (Linnaeus 1758) from the West Indian Ocean

期刊

ICES JOURNAL OF MARINE SCIENCE
卷 70, 期 7, 页码 1491-1498

出版社

OXFORD UNIV PRESS
DOI: 10.1093/icesjms/fst097

关键词

mtDNA control region; Panulirus homarus; population structure

资金

  1. Glenn Family Foundation
  2. University of Auckland
  3. University of Tehran

向作者/读者索取更多资源

The scalloped spiny lobster Panulirus homarus (Linnaeus, 1758) is a highly valuable species with a widespread global distribution, ranging from South Africa around the Persian Gulf, and across the Indo-Pacific as far as Japan and French Polynesia. Throughout its range, the species is an important fisheries species with global annual landings in the order of 3000 t. Mitochondrial control region DNA sequences (625 bp) were used to investigate the population genetic structure of this species in the West Indian Ocean (WIO), using 137 individuals collected from four sites, including two locations along the south coast of Iran, and sites along the coast of the Sultanate of Oman in the Arab Sea, as well as Tanzania in eastern Africa. High levels of haplotype diversity (H = 0.997) were observed in all populations, although nucleotide diversity was relatively low (pi = 0.035). The hypothesis of a single stock in this region was rejected, with highly significant genetic differentiation revealed between Tanzania and the remaining locations (overall Phi(ST) = 0.039, p < 0.00001), as well as slight genetic structure in the Arabian Sea region. Historical population expansion was inferred from Tajima's D and Fu's F tests. The results reveal at least two distinct genetic stocks in WIO and may have major implications for fisheries management.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.6
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Ecology

Genetic divergence between isolated populations of the North Island New Zealand Rifleman (Acanthisitta chloris granti) implicates ancient biogeographic impacts rather than recent habitat fragmentation

Sarah J. Withers, Stuart Parsons, Mark E. Hauber, Alistair Kendrick, Shane D. Lavery

Summary: This research examined the genetic population divergence in the North Island Rifleman, revealing several significantly divergent lineages across New Zealand's North Island and indicating isolated populations for extended periods. Modeling suggested a dynamic history of population connectivity with constraints on gene flow between regions but recent re-establishment of connectivity.

ECOLOGY AND EVOLUTION (2021)

Article Biochemistry & Molecular Biology

Towards reproducible metabarcoding data: Lessons from an international cross-laboratory experiment

Anastasija Zaiko, Paul Greenfield, Cathryn Abbott, Ulla von Ammon, Jaret Bilewitch, Michael Bunce, Melania E. Cristescu, Anthony Chariton, Eddy Dowle, Jonathan Geller, Alba Ardura Gutierrez, Mehrdad Hajibabaei, Emmet Haggard, Graeme J. Inglis, Shane D. Lavery, Aurelija Samuiloviene, Tiffany Simpson, Michael Stat, Sarah Stephenson, Judy Sutherland, Vibha Thakur, Kristen Westfall, Susanna A. Wood, Michael Wright, Guang Zhang, Xavier Pochon

Summary: Advances in high-throughput sequencing technology are changing marine monitoring by enabling rapid and accurate detection of species in complex samples. An international experiment showed that while there was variation in results from different laboratories, the primary signal in the data was consistent, with samples grouping by geographical origin. Post hoc data clean-up, such as removing low-quality samples, improved sample classification accuracy significantly.

MOLECULAR ECOLOGY RESOURCES (2022)

Article Biodiversity Conservation

Genogeographic clustering to identify cross-species concordance of spatial genetic patterns

Vanessa Arranz, Rachel M. Fewster, Shane D. Lavery

Summary: This study proposes a new method for comparative multi-species meta-analysis of published population genetic data. It uses a genogeographic clustering technique to capture common spatial patterns of genetic diversity among species and enables statistical comparison of these patterns. The method provides a novel approach to discern multiple common spatial patterns and allows for more rigorous comparative studies from diverse published data.

DIVERSITY AND DISTRIBUTIONS (2022)

Article Ecology

Finding the adaptive needles in a population-structured haystack: A case study in a New Zealand mollusc

Priscila M. Salloum, Anna W. Santure, Shane D. Lavery, Pierre de Villemereuil

Summary: Genome scans are powerful tools to understand genetic adaptation to future environmental conditions. However, low gene flow and population structure can lead to errors in these scans. This study compared different methods and identified candidate loci associated with environmental factors in a marine mollusc. The results highlight the importance of careful statistical controls in genome scans and suggest that further research is needed to determine the potential of non-model species to adapt to future environments.

JOURNAL OF ANIMAL ECOLOGY (2022)

Article Biology

Cardiac mitochondrial energetics of the Australasian red spiny lobster, Jasus edwardsii, when exposed to isoeugenol within the commercial anaesthetic AQUI-S

James Robertson, Andrew Jeffs, Christopher Hedges, Anthony J. R. Hickey

Summary: Isoeugenol, an anaesthetic used in the transportation of live lobsters, acts as a metabolic suppressant, reducing energy expenditure and improving survival rates. This study investigates the impact of isoeugenol on mitochondrial function, with a particular focus on respiration supported by complex I and cytochrome c oxidase. The results demonstrate that isoeugenol inhibits respiration through complex I and indicates it may act as a possible target for isoeugenol's effects.

JOURNAL OF EXPERIMENTAL BIOLOGY (2022)

Article Fisheries

Genome-wide SNPs reveal fine-scale genetic structure in ornate spiny lobster Panulirus ornatus throughout Indo-West Pacific Ocean

Ahmad Farhadi, Florian Pichlmueller, Bhargavi Yellapu, Shane Lavery, Andrew Jeffs

Summary: Genome-wide SNP typing can improve the management of marine species. In this study, the spiny lobster in the Indo-Pacific region was investigated. The results reveal a genetic break between populations in northern Australia and South East Asia, with significant implications for future fisheries management and aquaculture development.

ICES JOURNAL OF MARINE SCIENCE (2022)

Article Ecology

Comparative phylogeography in the genomic age: Opportunities and challenges

Angela McGaughran, Libby Liggins, Katharine A. Marske, Michael N. Dawson, Lauren M. Schiebelhut, Shane D. Lavery, L. Lacey Knowles, Craig Moritz, Cynthia Riginos

Summary: This article discusses the opportunities and challenges of comparative phylogeography in the genomic age, highlighting the importance of collecting co-distributed species and accruing species-specific ecological knowledge, as well as the availability of bioinformatic skills and user-friendly analytical tools for genomic data analysis.

JOURNAL OF BIOGEOGRAPHY (2022)

Article Fisheries

Improving the weaning of larval giant kokopu, Galaxias argenteus: An emerging aquaculture species

William J. G. McKay, Andrew G. Jeffs

Summary: This study examines the ability of larval giant kokopu to consume formulated larval diets at different ages and feeding events. The results suggest that as the larvae age, their consumption of formulated feed increases, indicating a potential to reduce the reliance on live feed. However, further research is needed to determine the impact on growth and survival.

JOURNAL OF THE WORLD AQUACULTURE SOCIETY (2023)

Article Green & Sustainable Science & Technology

The Effectiveness of Providing Shell Substrate for the Restoration of Adult Mussel Reefs

Emilee D. Benjamin, Jenny R. Hillman, Sean J. Handley, Trevyn A. Toone, Andrew Jeffs

Summary: Providing substrate is effective for oyster and mussel restoration. This study tested the effectiveness of adding shell substrate for adult green-lipped mussel restoration and found that it provided little advantage in high-density deployments.

SUSTAINABILITY (2022)

Article Fisheries

Potential for Concentrated Microalgae as Replacement Diets for Juvenile Green-Lipped Mussels, Perna canaliculus

Supono Supono, Maria Mugica, Stefan Spreitzenbarth, Andrew Jeffs

Summary: This study investigated the potential use of two concentrated microalgal diets as a replacement for live microalgae in bivalve nursery culture. The results showed that these diets can be used up to 50% substitution without compromising the survival and nutritional profile of juvenile green-lipped mussels.

AQUACULTURE RESEARCH (2023)

Article Ecology

Multidisciplinary baselines quantify a drastic decline of mussel reefs and reveal an absence of natural recovery

Trevyn A. Toone, Emilee D. Benjamin, Jenny R. Hillman, Sean Handley, Andrew Jeffs

Summary: The onset of the Anthropocene has resulted in significant global declines in natural ecosystems and the valuable goods and services they provide, necessitating ecosystem restoration. However, restoring ecosystems effectively requires accurate identification of causes of decline and clear metrics of success, which can only be achieved with baseline data of pre-degradation and pre-restoration ecosystems. This study demonstrates the use of multidisciplinary baselines in the restoration of mussel reefs in New Zealand, showing how combining various sources and methods allows for comprehensive and reliable assessment of ecosystem changes and confirmation of causes of degradation. This approach provides valuable insights for restoration efforts in quantifying the scales of decline, identifying intervention areas, and establishing metrics of success.

ECOSPHERE (2023)

Article Fisheries

Optimization of Artemia Feed Regimes for Larval Giant Kokopu (Galaxias argenteus)

William McKay, Andrew Jeffs

Summary: Optimizing the live feed is crucial for successful fish larviculture, as it impacts both larval health and productivity. This study compared the growth and survival of giant kokopu larvae fed different proportions of first-molt and second-molt Artemia nauplii. The results showed that using enriched second-molt Artemia as the sole feed achieved the best total productivity.

FISHES (2023)

Article Fisheries

The use of cameras on commercial deep-water trawls to investigate habitat associations and scampi trawl efficiency in New Zealand scampi Metanephrops challengeri

Alaric Mccarthy, Andrew Jeffs, Shaun Ogilvie, Dave Taylor, John Radford, Ian Tuck

Summary: This study assessed the effectiveness of using video cameras mounted on commercial trawls for a deep-sea lobster, and confirmed that video sampling can provide information on habitat associations and fishing efficiency.

FISHERIES SCIENCE (2023)

Article Fisheries

Comparison of Three Artificial Diets for the Larviculture of Giant Kokopu (Galaxias argenteus)

William McKay, Andrew Jeffs

Summary: The selection of artificial feed is crucial for the success of larviculture of fin fish. This study compares three commercial artificial dry feeds and finds that Otohime yields the best growth performance for giant kokopu larvae. Understanding the nutritional needs of larval giant kokopu is important for improving their commercial aquaculture production.

FISHES (2022)

Article Fisheries

Effectiveness of the Food-Safe Anaesthetic Isobutanol in the Live Transport of Tropical Spiny Lobster Species

Jayagopal Pozhoth, Andrew Jeffs

Summary: The study suggests that the use of isobutanol can reduce ammonia levels and mortalities during the live transport of tropical lobsters. Treatment with 50 ppm isobutanol in ambient seawater temperature is more effective than cold stunning treatment.

FISHES (2022)

暂无数据