Risk estimation and risk prediction using machine-learning methods

Personalized medicine using DNA biomarkers: a review

(2012) Andreas Ziegler et al.   HUMAN GENETICS

Identifying representative trees from ensembles

(2012) Mousumi Banerjee et al.   STATISTICS IN MEDICINE

High-dimensional pharmacogenetic prediction of a continuous trait using machine learning techniques with application to warfarin dose prediction in African Americans

(2011) Erdal Cosgun et al.   BIOINFORMATICS

The choice of null distributions for detecting gene-gene interactions in genome-wide association studies

(2011) Can Yang et al.   BMC BIOINFORMATICS

Validation in Genetic Association Studies

(2011) I. R. Konig   BRIEFINGS IN BIOINFORMATICS

A genome-wide screen of gene–gene interactions for rheumatoid arthritis susceptibility

(2011) Chunyu Liu et al.   HUMAN GENETICS

Methods for Identifying SNP Interactions: A Review on Variations of Logic Regression, Random Forest and Bayesian Logistic Regression

(2011) C. C. M. Chen et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Probability Machines

(2011) J. D. Malley et al.   METHODS OF INFORMATION IN MEDICINE

Ranking causal variants and associated regions in genome-wide association studies by the support vector machine and random forest

(2011) Usman Roshan et al.   NUCLEIC ACIDS RESEARCH

Classification and regression trees

(2011) Wei-Yin Loh   Wiley Interdisciplinary Reviews-Data Mining and Knowledge Discovery

On safari to Random Jungle: a fast implementation of Random Forests for high-dimensional data

(2010) Daniel F. Schwarz et al.   BIOINFORMATICS

Multifactor dimensionality reduction for graphics processing units enables genome-wide testing of epistasis in sporadic ALS

(2010) Casey S. Greene et al.   BIOINFORMATICS

The behaviour of random forest permutation-based variable importance measures under predictor correlation

(2010) Kristin K Nicodemus et al.   BMC BIOINFORMATICS

An application of Random Forests to a genome-wide association dataset: Methodological considerations & new findings

(2010) Benjamin A Goldstein et al.   BMC GENETICS

Improved Prediction of Cardiovascular Disease Based on a Panel of Single Nucleotide Polymorphisms Identified Through Genome-Wide Association Studies

(2010) Robert W. Davies et al.   Circulation-Cardiovascular Genetics

Identifying genetic interactions in genome-wide data using Bayesian networks

(2010) Xia Jiang et al.   GENETIC EPIDEMIOLOGY

Risk prediction using genome-wide association studies

(2010) Charles Kooperberg et al.   GENETIC EPIDEMIOLOGY

On the layered nearest neighbour estimate, the bagged nearest neighbour estimate and the random forest method in regression and classification

(2010) Gérard Biau et al.   JOURNAL OF MULTIVARIATE ANALYSIS

Application of Gene Network Analysis Techniques Identifies AXIN1/PDIA2 and Endoglin Haplotypes Associated with Bicuspid Aortic Valve

(2010) Eric C. Wooten et al.   PLoS One

Molecular Reclassification of Crohn's Disease by Cluster Analysis of Genetic Variants

(2010) Isabelle Cleynen et al.   PLoS One

Evaluating diagnostic accuracy of genetic profiles in affected offspring families

(2010) Jerome Carayol et al.   STATISTICS IN MEDICINE

A fast algorithm for genome-wide haplotype pattern mining

(2009) Søren Besenbacher et al.   BMC BIOINFORMATICS

A random forest approach to the detection of epistatic interactions in case-control studies

(2009) Rui Jiang et al.   BMC BIOINFORMATICS

MegaSNPHunter: a learning approach to detect disease predisposition SNPs and high level interactions in genome wide association study

(2009) Xiang Wan et al.   BMC BIOINFORMATICS

Population stratification and patterns of linkage disequilibrium

(2009) Anthony L. Hinrichs et al.   GENETIC EPIDEMIOLOGY

Genome-wide association studies: quality control and population-based measures

(2009) Andreas Ziegler   GENETIC EPIDEMIOLOGY

The Evaluation of Genomic Applications in Practice and Prevention (EGAPP) initiative: methods of the EGAPP Working Group

(2009) Steven M Teutsch et al.   GENETICS IN MEDICINE

Harnessing the information contained within genome-wide association studies to improve individual prediction of complex disease risk

(2009) David M. Evans et al.   HUMAN MOLECULAR GENETICS

On Graphically Checking Goodness-of-fit of Binary Logistic Regression Models

(2009) G. Gillmann et al.   METHODS OF INFORMATION IN MEDICINE

From Disease Association to Risk Assessment: An Optimistic View from Genome-Wide Association Studies on Type 1 Diabetes

(2009) Zhi Wei et al.   PLoS Genetics

Genome-based prediction of common diseases: advances and prospects

(2008) A. C. J.W. Janssens et al.   HUMAN MOLECULAR GENETICS

Patient-centered yes/no prognosis using learning machines

(2008) I.R. Konig et al.   International Journal of Data Mining and Bioinformatics

Gauging the Performance of SNPs, Biomarkers, and Clinical Factors for Predicting Risk of Breast Cancer

(2008) M. S. Pepe et al.   JNCI-Journal of the National Cancer Institute

Discriminatory Accuracy From Single-Nucleotide Polymorphisms in Models to Predict Breast Cancer Risk

(2008) M. H. Gail   JNCI-Journal of the National Cancer Institute

Sampling Uncertainty and Confidence Intervals for the Brier Score and Brier Skill Score

(2008) A. Allen Bradley et al.   WEATHER AND FORECASTING

Probability estimation for large-margin classifiers

(2007) J. Wang et al.   BIOMETRIKA