Identification of major quantitative trait loci and candidate genes for seed weight in soybean

Identification of ST1 reveals a selection involving hitchhiking of seed morphology and oil content during soybean domestication

(2022) Jun Li et al.   PLANT BIOTECHNOLOGY JOURNAL

Natural allelic variation of GmST05 controlling seed size and quality in soybean

(2022) Zongbiao Duan et al.   PLANT BIOTECHNOLOGY JOURNAL

GenoBaits Soy40K: a highly flexible and low-cost SNP array for soybean studies

(2022) Yucheng Liu et al.   Science China-Life Sciences

POWR1 is a domestication gene pleiotropically regulating seed quality and yield in soybean

(2022) Wolfgang Goettel et al.   Nature Communications

Development of the maize 5.5K loci panel for genomic prediction through genotyping by target sequencing

(2022) Juan Ma et al.   Frontiers in Plant Science

How array design creates SNP ascertainment bias

(2021) Johannes Geibel et al.   PLoS One

The SoySNP618K array: A high‐resolution SNP platform as a valuable genomic resource for soybean genetics and breeding

(2021) Yan‐Fei Li et al.   Journal of Integrative Plant Biology

Deacetylase-independent function of SIRT6 couples GATA4 transcription factor and epigenetic activation against cardiomyocyte apoptosis

(2020) Linyuan Peng et al.   NUCLEIC ACIDS RESEARCH

Simultaneous changes in seed size, oil content, and protein content driven by selection of SWEET homologues during soybean domestication

(2020) Shoudong Wang et al.   National Science Review

Identification of quantitative trait nucleotides and candidate genes for soybean seed weight by multiple models of genome-wide association study

(2020) Benjamin Karikari et al.   BMC PLANT BIOLOGY

Plant U‐box E3 ligases PUB25 and PUB26 control organ growth in Arabidopsis

(2020) Jing Li et al.   NEW PHYTOLOGIST

GmKIX8‐1 regulates organ size in soybean and is the causative gene for the major seed weight QTL qSw17‐1

(2020) Cuong X. Nguyen et al.   NEW PHYTOLOGIST

SMART: recent updates, new developments and status in 2020

(2020) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Identification of Additive–Epistatic QTLs Conferring Seed Traits in Soybean Using Recombinant Inbred Lines

(2020) Meng Li et al.   Frontiers in Plant Science

Genome-wide association study of four yield-related traits at the R6 stage in soybean

(2019) Xiangnan Li et al.   BMC GENETICS

Molecular Networks of Seed Size Control in Plants

(2019) Na Li et al.   Annual Review of Plant Biology

The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division

(2019) Ying Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identifying a wild allele conferring small seed size, high protein content and low oil content using chromosome segment substitution lines in soybean

(2019) Hongyan Yang et al.   THEORETICAL AND APPLIED GENETICS

Genome wide association mapping and candidate gene analysis for hundred seed weight in soybean [Glycine max (L.) Merrill]

(2019) Xue Zhao et al.   BMC GENOMICS

Genome-wide associations and epistatic interactions for internode number, plant height, seed weight and seed yield in soybean

(2019) Teshale Assefa et al.   BMC GENOMICS

Utilization of Interspecific High-Density Genetic Map of RIL Population for the QTL Detection and Candidate Gene Mining for 100-Seed Weight in Soybean

(2019) Benjamin Karikari et al.   Frontiers in Plant Science

Natural variation and selection in GmSWEET39 affect soybean seed oil content

(2019) Long Miao et al.   NEW PHYTOLOGIST

Dissecting genomic hotspots underlying seed protein, oil, and sucrose content in an interspecific mapping population of soybean using high-density linkage mapping

(2018) Gunvant Patil et al.   PLANT BIOTECHNOLOGY JOURNAL

Differential expression of a WRKY gene between wild and cultivated soybeans correlates to seed size

(2017) Yongzhe Gu et al.   JOURNAL OF EXPERIMENTAL BOTANY

A PP2C-1 Allele Underlying a Quantitative Trait Locus Enhances Soybean 100-Seed Weight

(2017) Xiang Lu et al.   Molecular Plant

Signaling pathways of seed size control in plants

(2016) Na Li et al.   CURRENT OPINION IN PLANT BIOLOGY

Identification of quantitative trait loci controlling soybean seed weight in recombinant inbred lines derived from PI 483463 (Glycine soja) × ‘Hutcheson’ (G. max)

(2016) Krishnanand P. Kulkarni et al.   PLANT BREEDING

The transcriptomic signature of developing soybean seeds reveals the genetic basis of seed trait adaptation during domestication

(2016) Xiang Lu et al.   PLANT JOURNAL

Increasing seed size and quality by manipulatingBIG SEEDS1in legume species

(2016) Liangfa Ge et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrastructural Characterization of the Lower Motor System in a Mouse Model of Krabbe Disease

(2016) Valentina Cappello et al.   Scientific Reports

Establishment of a 100-seed weight quantitative trait locus–allele matrix of the germplasm population for optimal recombination design in soybean breeding programmes

(2015) Yinghu Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Phyre2 web portal for protein modeling, prediction and analysis

(2015) Lawrence A Kelley et al.   Nature Protocols

Domestication footprints anchor genomic regions of agronomic importance in soybeans

(2015) Yingpeng Han et al.   NEW PHYTOLOGIST

A Recently Evolved Isoform of the Transcription Factor BES1 Promotes Brassinosteroid Signaling and Development inArabidopsis thaliana

(2015) Jianjun Jiang et al.   PLANT CELL

Transcription Factors SOD7/NGAL2 and DPA4/NGAL3 Act Redundantly to Regulate Seed Size by Directly RepressingKLUExpression inArabidopsis thaliana

(2015) Yueying Zhang et al.   PLANT CELL

Development, validation and genetic analysis of a large soybean SNP genotyping array

(2015) Yun-Gyeong Lee et al.   PLANT JOURNAL

OsMAPK6, a mitogen-activated protein kinase, influences rice grain size and biomass production

(2015) Shuying Liu et al.   PLANT JOURNAL

Arabidopsis KLU homologue GmCYP78A72 regulates seed size in soybean

(2015) Baotian Zhao et al.   PLANT MOLECULAR BIOLOGY

Genome-wide association study, genomic prediction and marker-assisted selection for seed weight in soybean (Glycine max)

(2015) Jiaoping Zhang et al.   THEORETICAL AND APPLIED GENETICS

Deciphering key features in protein structures with the new ENDscript server

(2014) Xavier Robert et al.   NUCLEIC ACIDS RESEARCH

A major and stable QTL associated with seed weight in soybean across multiple environments and genetic backgrounds

(2014) Shin Kato et al.   THEORETICAL AND APPLIED GENETICS

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Ubiquitin Receptor DA1 Interacts with the E3 Ubiquitin Ligase DA2 to Regulate Seed and Organ Size in Arabidopsis

(2013) T. Xia et al.   PLANT CELL

SMALL GRAIN 1, which encodes a mitogen-activated protein kinase kinase 4, influences grain size in rice

(2013) Penggen Duan et al.   PLANT JOURNAL

Brassinosteroid Regulates Seed Size and Shape in Arabidopsis

(2013) W.-B. Jiang et al.   PLANT PHYSIOLOGY

Development and Evaluation of SoySNP50K, a High-Density Genotyping Array for Soybean

(2013) Qijian Song et al.   PLoS One

QTL affecting fitness of hybrids between wild and cultivated soybeans in experimental fields

(2013) Yosuke Kuroda et al.   Ecology and Evolution

Identification of QTLs for eight agronomically important traits using an ultra-high-density map based on SNPs generated from high-throughput sequencing in sorghum under contrasting photoperiods

(2012) Guihua Zou et al.   JOURNAL OF EXPERIMENTAL BOTANY

Ln Is a Key Regulator of Leaflet Shape and Number of Seeds per Pod in Soybean

(2012) N. Jeong et al.   PLANT CELL

Analysis of the Developmental Roles of the Arabidopsis Gibberellin 20-Oxidases Demonstrates That GA20ox1, -2, and -3 Are the Dominant Paralogs

(2012) A. R. G. Plackett et al.   PLANT CELL

QTL analysis of soybean seed weight across multi-genetic backgrounds and environments

(2012) Yingpeng Han et al.   THEORETICAL AND APPLIED GENETICS

XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice

(2011) Yunhe Jiang et al.   PLANT JOURNAL

Major locus and other novel additive and epistatic loci involved in modulation of isoflavone concentration in soybean seeds

(2011) Juan J. Gutierrez-Gonzalez et al.   THEORETICAL AND APPLIED GENETICS

Identification of single nucleotide polymorphisms and haplotypes associated with yield and yield components in soybean (Glycine max) landraces across multiple environments

(2011) Derong Hao et al.   THEORETICAL AND APPLIED GENETICS

R/qtl: high-throughput multiple QTL mapping: Fig. 1.

(2010) Danny Arends et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

Into the wild: The soybean genome meets its undomesticated relative

(2010) R. M. Stupar   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Evaluation of putative reference genes for gene expression normalization in soybean by quantitative real-time RT-PCR

(2009) Ruibo Hu et al.   BMC MOLECULAR BIOLOGY

High-throughput genotyping by whole-genome resequencing

(2009) X. Huang et al.   GENOME RESEARCH

Local maternal control of seed size by KLUH/CYP78A5-dependent growth signaling

(2009) N. M. Adamski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Control of final seed and organ size by the DA1 gene family in Arabidopsis thaliana

(2008) Y. Li et al.   GENES & DEVELOPMENT

QTL analyses of seed weight during the development of soybean (Glycine max L. Merr.)

(2008) W Teng et al.   HEREDITY