Identification of genes for seed isoflavones based on bulk segregant analysis sequencing in soybean natural population

A general model for “germplasm-omics” data sharing and mining: a case study of SoyFGB v2.0

(2022) Tianqing Zheng et al.   Science Bulletin

Dual‐function C2H2‐type zinc‐finger transcription factor GmZFP7 contributes to isoflavone accumulation in soybean

(2022) Yue Feng et al.   NEW PHYTOLOGIST

Profiling and associations of seed nutritional characteristics in Chinese and USA soybean cultivars

(2021) Muhammad Azam et al.   JOURNAL OF FOOD COMPOSITION AND ANALYSIS

MdMYB8 is associated with flavonol biosynthesis via the activation of the MdFLS promoter in the fruits of Malus crabapple

(2020) Hua Li et al.   Horticulture Research

Regulation of Lignin Biosynthesis by Post-translational Protein Modifications

(2020) Daniel B. Sulis et al.   Frontiers in Plant Science

Identification of the gene network modules highly associated with the synthesis of phenolics compounds in barley by transcriptome and metabolome analysis

(2020) Zhigang Han et al.   FOOD CHEMISTRY

Chalcone synthase is ubiquitinated and degraded via interactions with a RING-H2 protein in petals of Paeonia hybrid ‘He Xie’

(2019) Zhaoyu Gu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Glucosinolate and phenylpropanoid biosynthesis are linked by proteasome‐dependent degradation of PAL

(2019) Jeong Im Kim et al.   NEW PHYTOLOGIST

Seed isoflavone profiling of 1168 soybean accessions from major growing ecoregions in China

(2019) Muhammad Azam et al.   FOOD RESEARCH INTERNATIONAL

Ten hub genes associated with progression and prognosis of pancreatic carcinoma identified by co-expression analysis

(2018) Zhou Zhou et al.   International Journal of Biological Sciences

Integrating co-expression networks with GWAS to prioritize causal genes in maize

(2018) Robert Schaefer et al.   PLANT CELL

Temporal network analysis identifies early physiological and transcriptomic indicators of mild drought in Brassica rapa

(2017) Kathleen Greenham et al.   eLife

Characterization of transcriptional modules related to fibrosing-NAFLD progression

(2017) Yi Lou et al.   Scientific Reports

Bulked sample analysis in genetics, genomics and crop improvement

(2016) Cheng Zou et al.   PLANT BIOTECHNOLOGY JOURNAL

Multifaceted Regulations of Gateway Enzyme Phenylalanine Ammonia-Lyase in the Biosynthesis of Phenylpropanoids

(2015) Xuebin Zhang et al.   Molecular Plant

Identification of a Highly Specific Isoflavone 7-O-glucosyltransferase in the soybean (Glycine max(L.) Merr.)

(2015) Ayuta Funaki et al.   PLANT AND CELL PHYSIOLOGY

Fruit, vegetable, and fiber intake in relation to cancer risk: findings from the European Prospective Investigation into Cancer and Nutrition (EPIC)

(2014) Kathryn E Bradbury et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

Floral Transcriptomes in Woodland Strawberry Uncover Developing Receptacle and Anther Gene Networks

(2014) C. A. Hollender et al.   PLANT PHYSIOLOGY

Bulk segregant RNA-seq reveals expression and positional candidate genes and allele-specific expression for disease resistance against enteric septicemia of catfish

(2013) Ruijia Wang et al.   BMC GENOMICS

Isoflavones profiling of soybean [Glycine max (L.) Merrill] germplasms and their correlations with metabolic pathways

(2013) Jae Kwang Kim et al.   FOOD CHEMISTRY

Ubiquitin protein ligase 3 mediates the proteasomal degradation of GLABROUS 3 and ENHANCER OF GLABROUS 3, regulators of trichome development and flavonoid biosynthesis in Arabidopsis

(2013) Barunava Patra et al.   PLANT JOURNAL

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

(2013) Hiroki Takagi et al.   PLANT JOURNAL

Bulk segregant analysis: “An effective approach for mapping consistent-effect drought grain yield QTLs in rice”

(2012) Prashant Vikram et al.   FIELD CROPS RESEARCH

Rapid HPLC Method for Determination of 12 Isoflavone Components in Soybean Seeds

(2011) Jun-ming SUN et al.   Agricultural Sciences in China

Changes in Diet and Lifestyle and Long-Term Weight Gain in Women and Men

(2011) Dariush Mozaffarian et al.   NEW ENGLAND JOURNAL OF MEDICINE

MATE2 Mediates Vacuolar Sequestration of Flavonoid Glycosides and Glycoside Malonates inMedicago truncatula

(2011) Jian Zhao et al.   PLANT CELL

Grass phenylpropanoids: Regulate before using!

(2011) John Gray et al.   PLANT SCIENCE

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

The Statistics of Bulk Segregant Analysis Using Next Generation Sequencing

(2011) Paul M. Magwene et al.   PLoS Computational Biology

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The biosynthesis of flavonoids is enhanced similarly by UV radiation and root zone salinity in L. vulgare leaves

(2010) Giovanni Agati et al.   JOURNAL OF PLANT PHYSIOLOGY

Efficiency of selective genotyping for genetic analysis of complex traits and potential applications in crop improvement

(2010) Yanping Sun et al.   MOLECULAR BREEDING

Dissection of genetically complex traits with extremely large pools of yeast segregants

(2010) Ian M. Ehrenreich et al.   NATURE

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Highly cost-efficient genome-wide association studies using DNA pools and dense SNP arrays

(2008) S. Macgregor et al.   NUCLEIC ACIDS RESEARCH

Polymorphisms of IFS1 and IFS2 gene are associated with isoflavone concentrations in soybean seeds

(2008) Hao Cheng et al.   PLANT SCIENCE