Combined population transcriptomic and genomic analysis reveals cis-regulatory differentiation of non-coding RNAs in maize
出版年份 2023 全文链接
标题
Combined population transcriptomic and genomic analysis reveals cis-regulatory differentiation of non-coding RNAs in maize
作者
关键词
-
出版物
THEORETICAL AND APPLIED GENETICS
Volume 136, Issue 1, Pages 1-13
出版商
Springer Science and Business Media LLC
发表日期
2023-01-21
DOI
10.1007/s00122-023-04293-2
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- A multi-tissue atlas of regulatory variants in cattle
- (2022) Shuli Liu et al. NATURE GENETICS
- Natural Variation in Crops: Realized Understanding, Continuing Promise
- (2021) Yameng Liang et al. Annual Review of Plant Biology
- Population-scale tissue transcriptomics maps long non-coding RNAs to complex disease
- (2021) Olivia M. de Goede et al. CELL
- From “Dark Matter” to “Star”: Insight Into the Regulation Mechanisms of Plant Functional Long Non-Coding RNAs
- (2021) Qingshuai Chen et al. Frontiers in Plant Science
- The parent-of-origin lncRNA MISSEN regulates rice endosperm development
- (2021) Yan-Fei Zhou et al. Nature Communications
- Cis and trans-regulatory variation in the domestication of the chili pepper fruit
- (2020) Erik Díaz-Valenzuela et al. MOLECULAR BIOLOGY AND EVOLUTION
- Functional Long Non-coding RNAs Evolve from Junk Transcripts
- (2020) Alexander F. Palazzo et al. CELL
- Where Are the Disease-Associated eQTLs?
- (2020) Benjamin D. Umans et al. TRENDS IN GENETICS
- Harnessing Knowledge from Maize and Rice Domestication for New Crop Breeding
- (2020) Qiuyue Chen et al. Molecular Plant
- Gene regulation by long non-coding RNAs and its biological functions
- (2020) Luisa Statello et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Evolutionary dynamics of linc RNA transcription in nine citrus species
- (2019) Lili Ke et al. PLANT JOURNAL
- Genome assembly of a tropical maize inbred line provides insights into structural variation and crop improvement
- (2019) Ning Yang et al. NATURE GENETICS
- Genome-wide analyses reveal the role of noncoding variation in complex traits during rice domestication
- (2019) X. M. Zheng et al. Science Advances
- Genome-wide Analysis of Transcriptional Variability in a Large Maize-Teosinte Population
- (2018) Xufeng Wang et al. Molecular Plant
- Wheat miR9678 Affects Seed Germination by Generating Phased siRNAs and Modulating Abscisic Acid/Gibberellin Signaling
- (2018) Guanghui Guo et al. PLANT CELL
- lncRNAs in Plant and Animal Sexual Reproduction
- (2018) Agnieszka A. Golicz et al. TRENDS IN PLANT SCIENCE
- New lncRNA annotation reveals extensive functional divergence of the transcriptome in maize
- (2018) Linqian Han et al. Journal of Integrative Plant Biology
- Kernel size‐related genes revealed by an integrated eQTL analysis during early maize kernel development
- (2018) Junling Pang et al. PLANT JOURNAL
- Transcriptional read-through of the long non-coding RNA SVALKA governs plant cold acclimation
- (2018) Peter Kindgren et al. Nature Communications
- The Long Intergenic Noncoding RNA (LincRNA) Landscape of the Soybean Genome
- (2017) Agnieszka A. Golicz et al. PLANT PHYSIOLOGY
- ZmCCT9enhances maize adaptation to higher latitudes
- (2017) Cheng Huang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genetic regulatory effects modified by immune activation contribute to autoimmune disease associations
- (2017) Sarah Kim-Hellmuth et al. Nature Communications
- Construction of the third-generation Zea mays haplotype map
- (2017) Robert Bukowski et al. GigaScience
- Genotype Imputation with Millions of Reference Samples
- (2016) Brian L. Browning et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Genetic Ancestry and Natural Selection Drive Population Differences in Immune Responses to Pathogens
- (2016) Yohann Nédélec et al. CELL
- Chromatin environment, transcriptional regulation, and splicing distinguish lincRNAs and mRNAs
- (2016) Marta Melé et al. GENOME RESEARCH
- Genetic variation in ZmVPP1 contributes to drought tolerance in maize seedlings
- (2016) Xianglan Wang et al. NATURE GENETICS
- Evolution to the rescue: using comparative genomics to understand long non-coding RNAs
- (2016) Igor Ulitsky NATURE REVIEWS GENETICS
- PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants
- (2016) Jinpu Jin et al. NUCLEIC ACIDS RESEARCH
- Genetic architecture of nonadditive inheritance inArabidopsis thalianahybrids
- (2016) Danelle K. Seymour et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Lessons from Domestication: Targeting Cis -Regulatory Elements for Crop Improvement
- (2016) Gwen Swinnen et al. TRENDS IN PLANT SCIENCE
- Fast and efficient QTL mapper for thousands of molecular phenotypes
- (2015) Halit Ongen et al. BIOINFORMATICS
- HISAT: a fast spliced aligner with low memory requirements
- (2015) Daehwan Kim et al. NATURE METHODS
- Analysis of non-coding transcriptome in rice and maize uncovers roles of conserved lncRNAs associated with agriculture traits
- (2015) Huan Wang et al. PLANT JOURNAL
- The human transcriptome across tissues and individuals
- (2015) M. Mele et al. SCIENCE
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Genome Wide Association Studies Using a New Nonparametric Model Reveal the Genetic Architecture of 17 Agronomic Traits in an Enlarged Maize Association Panel
- (2014) Ning Yang et al. PLoS Genetics
- The Role of cis Regulatory Evolution in Maize Domestication
- (2014) Zachary H. Lemmon et al. PLoS Genetics
- Genetic and Epigenetic Regulation of Human lincRNA Gene Expression
- (2013) Konstantin Popadin et al. AMERICAN JOURNAL OF HUMAN GENETICS
- CrossMap: a versatile tool for coordinate conversion between genome assemblies
- (2013) Hao Zhao et al. BIOINFORMATICS
- Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato
- (2013) D. Koenig et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RNA sequencing reveals the complex regulatory network in the maize kernel
- (2013) Junjie Fu et al. Nature Communications
- Lessons from eQTL mapping studies: non-coding regions and their role behind natural phenotypic variation in plants
- (2012) Francisco A Cubillos et al. CURRENT OPINION IN PLANT BIOLOGY
- Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels
- (2012) Hui Li et al. NATURE GENETICS
- Comparative population genomics of maize domestication and improvement
- (2012) Matthew B Hufford et al. NATURE GENETICS
- Genome-wide efficient mixed-model analysis for association studies
- (2012) Xiang Zhou et al. NATURE GENETICS
- Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis
- (2012) J. Liu et al. PLANT CELL
- Genome-Wide Association Studies Identified Three Independent Polymorphisms Associated with α-Tocopherol Content in Maize Kernels
- (2012) Qing Li et al. PLoS One
- Reshaping of the maize transcriptome by domestication
- (2012) R. Swanson-Wagner et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Rapid Turnover of Long Noncoding RNAs and the Evolution of Gene Expression
- (2012) Claudia Kutter et al. PLoS Genetics
- Negative Correlation between Expression Level and Evolutionary Rate of Long Intergenic Noncoding RNAs
- (2011) David Managadze et al. Genome Biology and Evolution
- Identification of a functional transposon insertion in the maize domestication gene tb1
- (2011) Anthony Studer et al. NATURE GENETICS
- Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP
- (2011) Jeffrey B. Endelman Plant Genome
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Characterization of a global germplasm collection and its potential utilization for analysis of complex quantitative traits in maize
- (2010) Xiaohong Yang et al. MOLECULAR BREEDING
- Understanding mechanisms underlying human gene expression variation with RNA sequencing
- (2010) Joseph K. Pickrell et al. NATURE
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Constructing genomic maps of positive selection in humans: Where do we go from here?
- (2009) J. M. Akey GENOME RESEARCH
- The Werner Syndrome Protein Binds Replication Fork and Holliday Junction DNAs as an Oligomer
- (2008) Sarah A. Compton et al. JOURNAL OF BIOLOGICAL CHEMISTRY
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started