Genetic mapping of Pinus flexilis major gene (Cr4) for resistance to white pine blister rust using transcriptome-based SNP genotyping

Comparative transcriptomics of a complex of four European pine species

(2015) Witold Wachowiak et al.   BMC GENOMICS

Transcriptome analysis of the white pine blister rust pathogen Cronartium ribicola: de novo assembly, expression profiling, and identification of candidate effectors

(2015) Jun-Jun Liu et al.   BMC GENOMICS

Limber pine in the central and southern Rocky Mountains: Stand conditions and interactions with blister rust, mistletoe, and bark beetles

(2015) Christy M. Cleaver et al.   FOREST ECOLOGY AND MANAGEMENT

Selection for resistance to white pine blister rust affects the abiotic stress tolerances of limber pine

(2015) Patrick J. Vogan et al.   FOREST ECOLOGY AND MANAGEMENT

Permanent forest plots show accelerating tree mortality in subalpine forests of the Colorado Front Range from 1982 to 2013

(2015) Jeremy M. Smith et al.   FOREST ECOLOGY AND MANAGEMENT

Disease Resistance Gene Analogs (RGAs) in Plants

(2015) Manoj Sekhwal et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The genetic architecture of local adaptation I: the genomic landscape of foxtail pine (Pinus balfouriana Grev. & Balf.) as revealed from a high-density linkage map

(2015) Christopher J. Friedline et al.   Tree Genetics & Genomes

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Paleo-evolutionary plasticity of plant disease resistance genes

(2014) Rongzhi Zhang et al.   BMC GENOMICS

Unique Features of the Loblolly Pine (Pinus taeda L.) Megagenome Revealed Through Sequence Annotation

(2014) J. L. Wegrzyn et al.   GENETICS

First insights into the transcriptome and development of new genomic tools of a widespread circum-Mediterranean tree species,Pinus halepensisMill

(2014) S. Pinosio et al.   Molecular Ecology Resources

Effectors as Tools in Disease Resistance Breeding Against Biotrophic, Hemibiotrophic, and Necrotrophic Plant Pathogens

(2014) Vivianne G. A. A. Vleeshouwers et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Genetic Resistance to Fusiform Rust in Southern Pines and White Pine Blister Rust in White Pines—A Contrasting Tale of Two Rust Pathosystems—Current Status and Future Prospects

(2014) Richard Sniezko et al.   Forests

Mapping Fusiform Rust Resistance Genes within a Complex Mating Design of Loblolly Pine

(2014) Tania Quesada et al.   Forests

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies

(2014) David B Neale et al.   GENOME BIOLOGY

Transcriptome analysis of Pinus monticola primary needles by RNA-seq provides novel insight into host resistance to Cronartium ribicola

(2013) Jun-Jun Liu et al.   BMC GENOMICS

Changes in white pine blister rust infection and mortality in limber pine over time

(2013) Cyndi M. Smith et al.   CANADIAN JOURNAL OF FOREST RESEARCH

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

White Pine Blister Rust Resistance in Limber Pine: Evidence for a Major Gene

(2013) A. W. Schoettle et al.   PHYTOPATHOLOGY

De novoassembly of maritime pine transcriptome: implications for forest breeding and biotechnology

(2013) Javier Canales et al.   PLANT BIOTECHNOLOGY JOURNAL

Advances in plant gene-targeted and functional markers: a review

(2013) Péter Poczai et al.   Plant Methods

Arabidopsis and Brachypodium distachyon Transgenic Plants Expressing Aspergillus nidulans Acetylesterases Have Decreased Degree of Polysaccharide Acetylation and Increased Resistance to Pathogens

(2013) G. Pogorelko et al.   PLANT PHYSIOLOGY

Pivoting the Plant Immune System from Dissection to Deployment

(2013) J. L. Dangl et al.   SCIENCE

Sequencing of the needle transcriptome from Norway spruce (Picea abies Karst L.) reveals lower substitution rates, but similar selective constraints in gymnosperms and angiosperms

(2012) Jun Chen et al.   BMC GENOMICS

Conifer genome sizes of 172 species, covering 64 of 67 genera, range from 8 to 72 picogram

(2012) B. J. M. Zonneveld   NORDIC JOURNAL OF BOTANY

The Transcriptome of Compatible and Incompatible Interactions of Potato (Solanum tuberosum) with Phytophthora infestans Revealed by DeepSAGE Analysis

(2012) Gabor Gyetvai et al.   PLoS One

Understanding and Exploiting Late Blight Resistance in the Age of Effectors

(2011) Vivianne G.A.A. Vleeshouwers et al.   Annual Review of Phytopathology

Accelerating the domestication of trees using genomic selection: accuracy of prediction models across ages and environments

(2011) M. F. R. Resende et al.   NEW PHYTOLOGIST

Association of a NovelPinus monticolaChitinase Gene (PmCh4B) with Quantitative Resistance toCronartium ribicola

(2011) Jun-Jun Liu et al.   PHYTOPATHOLOGY

Loss-of-Function Mutation of REDUCED WALL ACETYLATION2 in Arabidopsis Leads to Reduced Cell Wall Acetylation and Increased Resistance to Botrytis cinerea

(2011) Y. Manabe et al.   PLANT PHYSIOLOGY

Blister rust and western forest biodiversity: ecology, values and outlook for white pines

(2010) D. F. Tomback et al.   FOREST PATHOLOGY

Accurate Construction of Consensus Genetic Maps via Integer Linear Programming

(2010) Yonghui Wu et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Comparative mapping in Pinus: sugar pine (Pinus lambertiana Dougl.) and loblolly pine (Pinus taeda L.)

(2010) Kathleen D. Jermstad et al.   Tree Genetics & Genomes

Congruent Climate‐Related Genecological Responses from Molecular Markers and Quantitative Traits for Western White Pine (Pinus monticola)

(2009) Bryce A. Richardson et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

GhZFP1, a novel CCCH-type zinc finger protein from cotton, enhances salt stress tolerance and fungal disease resistance in transgenic tobacco by interacting with GZIRD21A and GZIPR5

(2009) Ying-Hui Guo et al.   NEW PHYTOLOGIST

Next-generation sequencing technologies and their implications for crop genetics and breeding

(2009) Rajeev K. Varshney et al.   TRENDS IN BIOTECHNOLOGY

Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice

(2008) Dong Wang et al.   BMC GENOMICS

The Cladosporium fulvum Virulence Protein Avr2 Inhibits Host Proteases Required for Basal Defense

(2008) H. P. van Esse et al.   PLANT CELL

Development of leucine-rich repeat polymorphism, amplified fragment length polymorphism, and sequence characterized amplified region markers to the Cronartium ribicola resistance gene Cr2 in western white pine (Pinus monticola)

(2008) Jun-Jun Liu et al.   Tree Genetics & Genomes