Disease Resistance Gene Analogs (RGAs) in Plants

Effector-Triggered Immunity: From Pathogen Perception to Robust Defense

(2015) Haitao Cui et al.   Annual Review of Plant Biology

Identification of new members of the MAPK gene family in plants shows diverse conserved domains and novel activation loop variants

(2015) Tapan Mohanta et al.   BMC GENOMICS

Genome-wide analysis of the gene families of resistance gene analogues in cotton and their response to Verticillium wilt

(2015) Jie-Yin Chen et al.   BMC PLANT BIOLOGY

Genome-Wide Distribution, Organisation and Functional Characterization of Disease Resistance and Defence Response Genes across Rice Species

(2015) Sangeeta Singh et al.   PLoS One

Coordination of MicroRNAs, PhasiRNAs, and NB-LRR Genes in Response to a Plant Pathogen: Insights from Analyses of a Set of Soybean Rps Gene Near-Isogenic Lines

(2015) Meixia Zhao et al.   Plant Genome

A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes

(2015) Katherine W Jordan et al.   GENOME BIOLOGY

Novel Insights into Rice Innate Immunity Against Bacterial and Fungal Pathogens

(2014) Wende Liu et al.   Annual Review of Phytopathology

Genome-wide comparative analysis of NBS-encoding genes between Brassica species and Arabidopsis thaliana

(2014) Jingyin Yu et al.   BMC GENOMICS

The plasticity of NBS resistance genes in sorghum is driven by multiple evolutionary processes

(2014) Emma Mace et al.   BMC PLANT BIOLOGY

Improving protein function prediction using domain and protein complexes in PPI networks

(2014) Wei Peng et al.   BMC Systems Biology

Transcriptional control of plant defence responses

(2014) Pierre Buscaill et al.   CURRENT OPINION IN PLANT BIOLOGY

Guiding deployment of resistance in cereals using evolutionary principles

(2014) Jeremy J. Burdon et al.   Evolutionary Applications

Large-scale analysis of NBS domain-encoding resistance gene analogs in Triticeae

(2014) Dhia Bouktila et al.   GENETICS AND MOLECULAR BIOLOGY

Dynamic evolution of NBS–LRR genes in bread wheat and its progenitors

(2014) Longjiang Gu et al.   MOLECULAR GENETICS AND GENOMICS

The Stripe Rust Resistance Gene Yr10 Encodes an Evolutionary-Conserved and Unique CC–NBS–LRR Sequence in Wheat

(2014) Wei Liu et al.   Molecular Plant

MicroRNA400-Guided Cleavage of Pentatricopeptide Repeat Protein mRNAs Renders Arabidopsis thaliana More Susceptible to Pathogenic Bacteria and Fungi

(2014) Young Ju Park et al.   PLANT AND CELL PHYSIOLOGY

Ectopic Expression of RESISTANCE TO POWDERY MILDEW8.1 Confers Resistance to Fungal and Oomycete Pathogens in Arabidopsis

(2014) Xian-Feng Ma et al.   PLANT AND CELL PHYSIOLOGY

Triticeae Resources in Ensembl Plants

(2014) Dan M. Bolser et al.   PLANT AND CELL PHYSIOLOGY

The Rice TAL Effector-Dependent Resistance Protein XA10 Triggers Cell Death and Calcium Depletion in the Endoplasmic Reticulum

(2014) D. Tian et al.   PLANT CELL

Cloning of the Arabidopsisrwm1gene for resistance toWatermelon mosaic viruspoints to a new function for natural virus resistance genes

(2014) Laurence Ouibrahim et al.   PLANT JOURNAL

Characterization of Resistance Gene Analogues (RGAs) in Apple (Malus × domestica Borkh.) and Their Evolutionary History of the Rosaceae Family

(2014) Michele Perazzolli et al.   PLoS One

Genome-Wide Identification and Expression Analysis of NBS-Encoding Genes in Malus x domestica and Expansion of NBS Genes Family in Rosaceae

(2014) Preeti Arya et al.   PLoS One

Structural Basis for Assembly and Function of a Heterodimeric Plant Immune Receptor

(2014) S. J. Williams et al.   SCIENCE

The Ph-3 gene from Solanum pimpinellifolium encodes CC-NBS-LRR protein conferring resistance to Phytophthora infestans

(2014) Chunzhi Zhang et al.   THEORETICAL AND APPLIED GENETICS

Transcript profiles of maize embryo sacs and preliminary identification of genes involved in the embryo sac–pollen tube interaction

(2014) Shuai Shuai Wang et al.   Frontiers in Plant Science

MAPK Cascades in Plant Disease Resistance Signaling

(2013) Xiangzong Meng et al.   Annual Review of Phytopathology

Centrality of Host Cell Death in Plant-Microbe Interactions

(2013) Martin B. Dickman et al.   Annual Review of Phytopathology

Genome-wide identification, characterization and expression analysis of populus leucine-rich repeat receptor-like protein kinase genes

(2013) Yanjun Zan et al.   BMC GENOMICS

A 1,681-locus consensus genetic map of cultivated cucumber including 67 NB-LRR resistance gene homolog and ten gene loci

(2013) Luming Yang et al.   BMC PLANT BIOLOGY

Genome-wide identification and comparative expression analysis of NBS–LRR-encoding genes upon Colletotrichum gloeosporioides infection in two ecotypes of Fragaria vesca

(2013) Jing Li et al.   GENE

Plant Nucleotide Binding Site–Leucine-Rich Repeat (NBS-LRR) Genes: Active Guardians in Host Defense Responses

(2013) Daniela Marone et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Building Phylogenetic Trees from Molecular Data with MEGA

(2013) B. G. Hall   MOLECULAR BIOLOGY AND EVOLUTION

Genome-wide identification and analysis of candidate genes for disease resistance in tomato

(2013) G. Andolfo et al.   MOLECULAR BREEDING

Draft genome of the wheat A-genome progenitor Triticum urartu

(2013) Hong-Qing Ling et al.   NATURE

Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation

(2013) Jizeng Jia et al.   NATURE

Gramene 2013: comparative plant genomics resources

(2013) Marcela K. Monaco et al.   NUCLEIC ACIDS RESEARCH

The genome portal of the Department of Energy Joint Genome Institute: 2014 updates

(2013) Henrik Nordberg et al.   NUCLEIC ACIDS RESEARCH

Identification of Arabidopsis BAK1-Associating Receptor-Like Kinase 1 (BARK1) and Characterization of its Gene Expression and Brassinosteroid-Regulated Root Phenotypes

(2013) Min Hee Kim et al.   PLANT AND CELL PHYSIOLOGY

A Comprehensive Mutational Analysis of the Arabidopsis Resistance Protein RPW8.2 Reveals Key Amino Acids for Defense Activation and Protein Targeting

(2013) W. Wang et al.   PLANT CELL

Novel applications of motif-directed profiling to identify disease resistance genes in plants

(2013) Jack H Vossen et al.   Plant Methods

Analysis of nucleotide diversity among alleles of the major bacterial blight resistance gene Xa27 in cultivars of rice (Oryza sativa) and its wild relatives

(2013) Waikhom Bimolata et al.   PLANTA

Systematic Analysis and Comparison of Nucleotide-Binding Site Disease Resistance Genes in a Diploid Cotton Gossypium raimondii

(2013) Hengling Wei et al.   PLoS One

Mosaic genome structure of the barley powdery mildew pathogen and conservation of transcriptional programs in divergent hosts

(2013) S. Hacquard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Rf and Rf-like PPR in higher plants, a fast-evolving subclass of PPR genes

(2013) Jennifer Dahan et al.   RNA Biology

Identification of Wheat Gene Sr35 That Confers Resistance to Ug99 Stem Rust Race Group

(2013) C. Saintenac et al.   SCIENCE

The Gene Sr33, an Ortholog of Barley Mla Genes, Encodes Resistance to Wheat Stem Rust Race Ug99

(2013) S. Periyannan et al.   SCIENCE

The First 50 Plant Genomes

(2013) Todd P. Michael et al.   Plant Genome

Mediated Plastid RNA Editing in Plant Immunity

(2013) Javier García-Andrade et al.   PLoS Pathogens

Identification and localisation of the NB-LRR gene family within the potato genome

(2012) Florian Jupe et al.   BMC GENOMICS

Disruption of PAMP-Induced MAP Kinase Cascade by a Pseudomonas syringae Effector Activates Plant Immunity Mediated by the NB-LRR Protein SUMM2

(2012) Zhibin Zhang et al.   Cell Host & Microbe

Genome Wide Analysis of Nucleotide-Binding Site Disease Resistance Genes inBrachypodium distachyon

(2012) Shenglong Tan et al.   COMPARATIVE AND FUNCTIONAL GENOMICS

How to build a pathogen detector: structural basis of NB-LRR function

(2012) Frank LW Takken et al.   CURRENT OPINION IN PLANT BIOLOGY

Systematic analysis and comparison of nucleotide-binding site disease resistance genes in maize

(2012) Ying Cheng et al.   FEBS Journal

A novel blast resistance gene, Pi54rh cloned from wild species of rice, Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae

(2012) Alok Das et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Direct interaction of ligand-receptor pairs specifying stomatal patterning

(2012) J. S. Lee et al.   GENES & DEVELOPMENT

Genome-wide identification and characterization of nucleotide binding site leucine-rich repeat genes in linseed reveal distinct patterns of gene structure

(2012) Sandip M. Kale et al.   GENOME

A genome-wide comparison of NB-LRR type of resistance gene analogs (RGA) in the plant kingdom

(2012) Jungeun Kim et al.   MOLECULES AND CELLS

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

Maize HapMap2 identifies extant variation from a genome in flux

(2012) Jer-Ming Chia et al.   NATURE GENETICS

Plant disease resistance genes: Current status and future directions

(2012) Mayank Anand Gururani et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

Lysin Motif-Containing Proteins LYP4 and LYP6 Play Dual Roles in Peptidoglycan and Chitin Perception in Rice Innate Immunity

(2012) B. Liu et al.   PLANT CELL

The Apoplastic Oxidative Burst Peroxidase in Arabidopsis Is a Major Component of Pattern-Triggered Immunity

(2012) A. Daudi et al.   PLANT CELL

A MicroRNA Superfamily Regulates Nucleotide Binding Site-Leucine-Rich Repeats and Other mRNAs

(2012) P. V. Shivaprasad et al.   PLANT CELL

A Peroxidase-Dependent Apoplastic Oxidative Burst in Cultured Arabidopsis Cells Functions in MAMP-Elicited Defense

(2012) J. A. O'Brien et al.   PLANT PHYSIOLOGY

Dynamic Nucleotide-Binding Site and Leucine-Rich Repeat-Encoding Genes in the Grass Family

(2012) S. Luo et al.   PLANT PHYSIOLOGY

A Primary Survey on Bryophyte Species Reveals Two Novel Classes of Nucleotide-Binding Site (NBS) Genes

(2012) Jia-Yu Xue et al.   PLoS One

Genome-Wide Identification and Mapping of NBS-Encoding Resistance Genes in Solanum tuberosum Group Phureja

(2012) Roberto Lozano et al.   PLoS One

Catch me if you can: bacterial effectors and plant targets

(2012) Laurent Deslandes et al.   TRENDS IN PLANT SCIENCE

Chloroplast-mediated activation of plant immune signalling in Arabidopsis

(2012) Hironari Nomura et al.   Nature Communications

Coiled-Coil Domain-Dependent Homodimerization of Intracellular Barley Immune Receptors Defines a Minimal Functional Module for Triggering Cell Death

(2011) Takaki Maekawa et al.   Cell Host & Microbe

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs

(2011) J. Zhai et al.   GENES & DEVELOPMENT

Cell Death Mediated by the N-Terminal Domains of a Unique and Highly Conserved Class of NB-LRR Protein

(2011) Sarah M. Collier et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Whole-genome sequencing of multiple Arabidopsis thaliana populations

(2011) Jun Cao et al.   NATURE GENETICS

Tracing the origin and evolutionary history of plant nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes

(2011) Jia-Xing Yue et al.   NEW PHYTOLOGIST

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

A paralog of the MtN3/saliva family recessively confers race-specific resistance to Xanthomonas oryzae in rice

(2011) QINSONG LIU et al.   PLANT CELL AND ENVIRONMENT

Potato and Tomato Late Blight Caused byPhytophthora infestans: An Overview of Pathology and Resistance Breeding

(2011) Marcin Nowicki et al.   PLANT DISEASE

A multifaceted genomics approach allows the isolation of the rice Pia-blast resistance gene consisting of two adjacent NBS-LRR protein genes

(2011) Yudai Okuyama et al.   PLANT JOURNAL

Genome-Wide Comparison of Nucleotide-Binding Site-Leucine-Rich Repeat-Encoding Genes in Arabidopsis

(2011) Y.-L. Guo et al.   PLANT PHYSIOLOGY

RNA PROCESSING FACTOR3 Is Crucial for the Accumulation of Mature ccmC Transcripts in Mitochondria of Arabidopsis Accession Columbia

(2011) C. Jonietz et al.   PLANT PHYSIOLOGY

Serine/threonine kinase gene Stpk-V, a key member of powdery mildew resistance gene Pm21, confers powdery mildew resistance in wheat

(2011) A. Cao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Arabidopsis EDS1 Connects Pathogen Effector Recognition to Cell Compartment-Specific Immune Responses

(2011) K. Heidrich et al.   SCIENCE

Pathogen Effectors Target Arabidopsis EDS1 and Alter Its Interactions with Immune Regulators

(2011) S. Bhattacharjee et al.   SCIENCE

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Multipoint-likelihood maximization mapping on 4 segregating populations to achieve an integrated framework map for QTL analysis in pot azalea (Rhododendron simsii hybrids)

(2010) Ellen De Keyser et al.   BMC MOLECULAR BIOLOGY

A genomic analysis of disease-resistance genes encoding nucleotide binding sites in Sorghum bicolor

(2010) Xiao Cheng et al.   GENETICS AND MOLECULAR BIOLOGY

A map of human genome variation from population-scale sequencing

(2010) Richard M. Durbin et al.   NATURE

RNA PROCESSING FACTOR2 Is Required for 5' End Processing of nad9 and cox3 mRNAs in Mitochondria of Arabidopsis thaliana

(2010) C. Jonietz et al.   PLANT CELL

Identification and characterization of NBS-encoding disease resistance genes in Lotus japonicus

(2010) Xiaoyu Li et al.   PLANT SYSTEMATICS AND EVOLUTION

Peroxidase Profiling Reveals Genetic Linkage between Peroxidase Gene Clusters and Basal Host and Non-Host Resistance to Rusts and Mildew in Barley

(2010) Ana M. González et al.   PLoS One

Fungal Effector Proteins

(2009) Ioannis Stergiopoulos et al.   Annual Review of Phytopathology

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Hidden Markov Models and their Applications in Biological Sequence Analysis

(2009) Byung-Jun Yoon   CURRENT GENOMICS

STANDing strong, resistance proteins instigators of plant defence

(2009) Ewa Lukasik et al.   CURRENT OPINION IN PLANT BIOLOGY

Identification of a New Rice Blast Resistance Gene, Pid3 , by Genomewide Comparison of Paired Nucleotide-Binding Site–Leucine-Rich Repeat Genes and Their Pseudogene Alleles Between the Two Sequenced Rice Genomes

(2009) Junjun Shang et al.   GENETICS

Genome-wide analysis of Carica papaya reveals a small NBS resistance gene family

(2009) Brad W. Porter et al.   MOLECULAR GENETICS AND GENOMICS

PRGdb: a bioinformatics platform for plant resistance gene analysis

(2009) Walter Sanseverino et al.   NUCLEIC ACIDS RESEARCH

CUDA–MEME: Accelerating motif discovery in biological sequences using CUDA-enabled graphics processing units

(2009) Yongchao Liu et al.   PATTERN RECOGNITION LETTERS

QTL mapping and marker-assisted selection forFusariumhead blight resistance in wheat: a review

(2009) H. Buerstmayr et al.   PLANT BREEDING

A Type I-Secreted, Sulfated Peptide Triggers XA21-Mediated Innate Immunity

(2009) S.-W. Lee et al.   SCIENCE

Terrific Protein Traffic: The Mystery of Effector Protein Delivery by Filamentous Plant Pathogens

(2009) R. Panstruga et al.   SCIENCE

A Kinase-START Gene Confers Temperature-Dependent Resistance to Wheat Stripe Rust

(2009) D. Fu et al.   SCIENCE

A Putative ABC Transporter Confers Durable Resistance to Multiple Fungal Pathogens in Wheat

(2009) S. G. Krattinger et al.   SCIENCE

A First-Generation Haplotype Map of Maize

(2009) M. A. Gore et al.   SCIENCE

On the Expansion of the Pentatricopeptide Repeat Gene Family in Plants

(2008) N. O'Toole et al.   MOLECULAR BIOLOGY AND EVOLUTION

Recent duplications dominate NBS-encoding gene expansion in two woody species

(2008) Sihai Yang et al.   MOLECULAR GENETICS AND GENOMICS

Genetic diversity and genomic distribution of homologs encoding NBS-LRR disease resistance proteins in sunflower

(2008) Osman Radwan et al.   MOLECULAR GENETICS AND GENOMICS

OsWRKY62 is a Negative Regulator of Basal and Xa21-Mediated Defense against Xanthomonas oryzae pv. oryzae in Rice

(2008) Ying Peng et al.   Molecular Plant

Plant Receptor-Like Serine Threonine Kinases: Roles in Signaling and Plant Defense

(2008) Ahmed J. Afzal et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)

(2008) Ray Ming et al.   NATURE

NCBI Reference Sequences: current status, policy and new initiatives

(2008) K. D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

The Coiled-Coil and Nucleotide Binding Domains of the Potato Rx Disease Resistance Protein Function in Pathogen Recognition and Signaling

(2008) G. J. Rairdan et al.   PLANT CELL

Genome-wide identification of NBS resistance genes in Populus trichocarpa

(2008) Annegret Kohler et al.   PLANT MOLECULAR BIOLOGY

Arabidopsis CLV3 Peptide Directly Binds CLV1 Ectodomain

(2008) M. Ogawa et al.   SCIENCE

Pentatricopeptide repeat proteins: a socket set for organelle gene expression

(2008) C SCHMITZLINNEWEBER et al.   TRENDS IN PLANT SCIENCE