Comparative analysis of the blood transcriptomes between wolves and dogs

Population transcriptomes reveal synergistic responses of DNA polymorphism and RNA expression to extreme environments on the Qinghai-Tibetan Plateau in a predatory bird

(2017) Shengkai Pan et al.   MOLECULAR ECOLOGY

First insights into the giant panda (Ailuropoda melanoleuca) blood transcriptome: a resource for novel gene loci and immunogenetics

(2015) Lianming Du et al.   Molecular Ecology Resources

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Robustly detecting differential expression in RNA sequencing data using observation weights

(2014) Xiaobei Zhou et al.   NUCLEIC ACIDS RESEARCH

An Improved Canine Genome and a Comprehensive Catalogue of Coding Genes and Non-Coding Transcripts

(2014) Marc P. Hoeppner et al.   PLoS One

The peripheral blood transcriptome reflects variations in immunity traits in swine: towards the identification of biomarkers

(2013) Núria Mach et al.   BMC GENOMICS

Analysis of the canine brain transcriptome with an emphasis on the hypothalamus and cerebral cortex

(2013) Meenakshi Roy et al.   MAMMALIAN GENOME

Artificial Selection on Brain-Expressed Genes during the Domestication of Dog

(2013) Yan Li et al.   MOLECULAR BIOLOGY AND EVOLUTION

Repeated elevational transitions in hemoglobin function during the evolution of Andean hummingbirds

(2013) J. Projecto-Garcia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epistasis Among Adaptive Mutations in Deer Mouse Hemoglobin

(2013) C. Natarajan et al.   SCIENCE

Erythroid Heme Biosynthesis and Its Disorders

(2013) H. A. Dailey et al.   Cold Spring Harbor Perspectives in Medicine

Whole blood transcriptome correlates with treatment response in nasopharyngeal carcinoma

(2012) Adel M Zaatar et al.   JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Real-time PCR of the mammalian hydroxymethylbilane synthase (HMBS) gene for analysis of flea (Ctenocephalides felis) feeding patterns on dogs

(2012) Chengming Wang et al.   Parasites & Vectors

Essential Role of RAB27A in Determining Constitutive Human Skin Color

(2012) Yasuko Yoshida-Amano et al.   PLoS One

Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change

(2012) W. Miller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Construction and immune effect of Haemophilus parasuis DNA vaccine encoding glyceraldehyde-3-phosphate dehydrogenase (GAPDH) in mice

(2012) Shulin Fu et al.   VACCINE

Transcriptome Profiling of Whole Blood Cells Identifies PLEK2 and C1QB in Human Melanoma

(2011) Yuchun Luo et al.   PLoS One

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Downregulation of the Spi-1/PU.1 oncogene induces the expression of TRIM10/HERF1, a key factor required for terminal erythroid cell differentiation and survival

(2008) Rand Blaybel et al.   CELL RESEARCH

Mechanisms of Hemoglobin Adaptation to High Altitude Hypoxia

(2008) Jay F. Storz et al.   HIGH ALTITUDE MEDICINE & BIOLOGY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

(2008) U. Nagalakshmi et al.   SCIENCE