Perspective: Dissipative particle dynamics

An overview of smoothed particle hydrodynamics for simulating multiphase flow

(2016) Zhi-Bin Wang et al.   APPLIED MATHEMATICAL MODELLING

Dissipative Particle Dynamics interaction parameters from ab initio calculations

(2016) Fatemeh Sepehr et al.   CHEMICAL PHYSICS LETTERS

Modeling mesoscopic solidification using dissipative particle dynamics

(2016) Erik O. Johansson et al.   INTERNATIONAL JOURNAL OF THERMAL SCIENCES

Particle-based simulations of red blood cells—A review

(2016) Ting Ye et al.   JOURNAL OF BIOMECHANICS

Many-Body Dissipative Particle Dynamics Simulation of Liquid–Vapor Coexisting Curve in Sodium

(2016) Maryam Atashafrooz et al.   JOURNAL OF CHEMICAL AND ENGINEERING DATA

Coarse-Grained Models for Automated Fragmentation and Parametrization of Molecular Databases

(2016) Johannes G. E. M. Fraaije et al.   Journal of Chemical Information and Modeling

Development of DPD coarse-grained models: From bulk to interfacial properties

(2016) José G. Solano Canchaya et al.   JOURNAL OF CHEMICAL PHYSICS

Multiscale simulation of ideal mixtures using smoothed dissipative particle dynamics

(2016) Nikolai D. Petsev et al.   JOURNAL OF CHEMICAL PHYSICS

Dynamic force matching: Construction of dynamic coarse-grained models with realistic short time dynamics and accurate long time dynamics

(2016) Aram Davtyan et al.   JOURNAL OF CHEMICAL PHYSICS

On the connection between dissipative particle dynamics and the Itô-Stratonovich dilemma

(2016) Oded Farago et al.   JOURNAL OF CHEMICAL PHYSICS

A coarse-grain force field for RDX: Density dependent and energy conserving

(2016) Joshua D. Moore et al.   JOURNAL OF CHEMICAL PHYSICS

Finite element formulation of fluctuating hydrodynamics for fluids filled with rigid particles using boundary fitted meshes

(2016) M. De Corato et al.   JOURNAL OF COMPUTATIONAL PHYSICS

Pairwise adaptive thermostats for improved accuracy and stability in dissipative particle dynamics

(2016) Benedict Leimkuhler et al.   JOURNAL OF COMPUTATIONAL PHYSICS

Smoothed particle hydrodynamics (SPH) for free-surface flows: past, present and future

(2016) Damien Violeau et al.   JOURNAL OF HYDRAULIC RESEARCH

Toward a Standard Protocol for Micelle Simulation

(2016) Michael A. Johnston et al.   JOURNAL OF PHYSICAL CHEMISTRY B

The self-assembly of copolymers with one hydrophobic and one polyelectrolyte block in aqueous media: a dissipative particle dynamics study

(2016) Martin Lísal et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Energy-conserving coarse-graining of complex molecules

(2016) Pep Español et al.   Soft Matter

Polymer-brush lubrication: a review of recent theoretical advances

(2016) T. Kreer   Soft Matter

Microfluidic Synthesis of Rigid Nanovesicles for Hydrophilic Reagents Delivery

(2015) Lu Zhang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Droplets impact on textured surfaces: Mesoscopic simulation of spreading dynamics

(2015) Yuxiang Wang et al.   APPLIED SURFACE SCIENCE

Mesoscale modeling of phase transition dynamics of thermoresponsive polymers

(2015) Zhen Li et al.   CHEMICAL COMMUNICATIONS

Dissipative particle dynamics study of the water/benzene/caprolactam system in the absence or presence of non-ionic surfactants

(2015) Kaihang Shi et al.   CHEMICAL ENGINEERING SCIENCE

Viscosity measurement techniques in Dissipative Particle Dynamics

(2015) Arman Boromand et al.   COMPUTER PHYSICS COMMUNICATIONS

Coarse-Grained Molecular Simulations to Investigate Asphaltenes at the Oil–Water Interface

(2015) Yosadara Ruiz-Morales et al.   ENERGY & FUELS

Bottom-up coarse-grained models that accurately describe the structure, pressure, and compressibility of molecular liquids

(2015) Nicholas J. H. Dunn et al.   JOURNAL OF CHEMICAL PHYSICS

Modeling nanoscale hydrodynamics by smoothed dissipative particle dynamics

(2015) Huan Lei et al.   JOURNAL OF CHEMICAL PHYSICS

Bayesian parametrization of coarse-grain dissipative dynamics models

(2015) Alain Dequidt et al.   JOURNAL OF CHEMICAL PHYSICS

Liquid–liquid equilibria for soft-repulsive particles: Improved equation of state and methodology for representing molecules of different sizes and chemistry in dissipative particle dynamics

(2015) Thilanga P. Liyana-Arachchi et al.   JOURNAL OF CHEMICAL PHYSICS

Transport dissipative particle dynamics model for mesoscopic advection-diffusion-reaction problems

(2015) Zhen Li et al.   JOURNAL OF CHEMICAL PHYSICS

Hybrid molecular-continuum simulations using smoothed dissipative particle dynamics

(2015) Nikolai D. Petsev et al.   JOURNAL OF CHEMICAL PHYSICS

Coupling a nano-particle with isothermal fluctuating hydrodynamics: Coarse-graining from microscopic to mesoscopic dynamics

(2015) Pep Español et al.   JOURNAL OF CHEMICAL PHYSICS

Smoothed dissipative particle dynamics with angular momentum conservation

(2015) Kathrin Müller et al.   JOURNAL OF COMPUTATIONAL PHYSICS

Multiscale Universal Interface: A concurrent framework for coupling heterogeneous solvers

(2015) Yu-Hang Tang et al.   JOURNAL OF COMPUTATIONAL PHYSICS

On the numerical treatment of dissipative particle dynamics and related systems

(2015) Benedict Leimkuhler et al.   JOURNAL OF COMPUTATIONAL PHYSICS

Designing Nanoparticle Translocation through Cell Membranes by Varying Amphiphilic Polymer Coatings

(2015) Liuyang Zhang et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Multiscale Modeling of the Polymer–Silica Surface Interaction: From Atomistic to Mesoscopic Simulations

(2015) G. Maurel et al.   Journal of Physical Chemistry C

Competition between side chain length and side chain distribution: Searching for optimal polymeric architectures for application in fuel cell membranes

(2015) G. Dorenbos   JOURNAL OF POWER SOURCES

Self-Assembly of Polymer Tethered Molecular Nanoparticle Shape Amphiphiles in Selective Solvents

(2015) Shiying Ma et al.   MACROMOLECULES

Microvascular blood flow resistance: Role of red blood cell migration and dispersion

(2015) Dinar Katanov et al.   MICROVASCULAR RESEARCH

A polarizable coarse-grained protein model for dissipative particle dynamics

(2015) Emanuel K. Peter et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Membrane protein mobility depends on the length of extra-membrane domains and on the protein concentration

(2015) Gernot Guigas et al.   Soft Matter

Cooperative Transmembrane Penetration of Nanoparticles

(2015) Haizhen Zhang et al.   Scientific Reports

Three-dimensional simulations of dilute and concentrated suspensions using smoothed particle hydrodynamics

(2015) Adolfo Vázquez-Quesada et al.   Computational Particle Mechanics

Dissipative Particle Dynamics (DPD): An Overview and Recent Developments

(2014) M. B. Liu et al.   ARCHIVES OF COMPUTATIONAL METHODS IN ENGINEERING

Multiscale Particle-Based Modeling of Flowing Platelets in Blood Plasma Using Dissipative Particle Dynamics and Coarse Grained Molecular Dynamics

(2014) Peng Zhang et al.   Cellular and Molecular Bioengineering

Estimation of interfacial tension for immiscible and partially miscible liquid systems by Dissipative Particle Dynamics

(2014) Himanshu Goel et al.   CHEMICAL PHYSICS LETTERS

Conservative and dissipative force field for simulation of coarse-grained alkane molecules: A bottom-up approach

(2014) Sébastien Trément et al.   JOURNAL OF CHEMICAL PHYSICS

Screening properties of four mesoscale smoothed charge models, with application to dissipative particle dynamics

(2014) Patrick B. Warren et al.   JOURNAL OF CHEMICAL PHYSICS

Bottom-up derivation of conservative and dissipative interactions for coarse-grained molecular liquids with the conditional reversible work method

(2014) Gregor Deichmann et al.   JOURNAL OF CHEMICAL PHYSICS

A polarizable coarse-grained water model for dissipative particle dynamics

(2014) Emanuel K. Peter et al.   JOURNAL OF CHEMICAL PHYSICS

An analytical coarse-graining method which preserves the free energy, structural correlations, and thermodynamic state of polymer melts from the atomistic to the mesoscale

(2014) J. McCarty et al.   JOURNAL OF CHEMICAL PHYSICS

Dynamic density functional theory with hydrodynamic interactions and fluctuations

(2014) Aleksandar Donev et al.   JOURNAL OF CHEMICAL PHYSICS

Spatially adaptive stochastic methods for fluid–structure interactions subject to thermal fluctuations in domains with complex geometries

(2014) Pat Plunkett et al.   JOURNAL OF COMPUTATIONAL PHYSICS

Coarse-Grain Model Simulations of Nonequilibrium Dynamics in Heterogeneous Materials

(2014) John K. Brennan et al.   Journal of Physical Chemistry Letters

A spring model for suspended particles in dissipative particle dynamics

(2014) N. Phan-Thien et al.   JOURNAL OF RHEOLOGY

A reversible mesoscopic model of diffusion in liquids: from giant fluctuations to Fick’s law

(2014) Aleksandar Donev et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

Dissipative Particle Dynamics Study of Electrostatic Self-Assembly in Aqueous Mixtures of Copolymers Containing One Neutral Water-Soluble Block and One Either Positively or Negatively Charged Polyelectrolyte Block

(2014) Karel Šindelka et al.   MACROMOLECULES

Thermal Properties and Topology of Epoxy Networks: A Multiscale Simulation Methodology

(2014) Alexey A. Gavrilov et al.   MACROMOLECULES

Efficient solvent-free dissipative particle dynamics for lipid bilayers

(2014) G. J. A. Sevink et al.   Soft Matter

Construction of dissipative particle dynamics models for complex fluids via the Mori–Zwanzig formulation

(2014) Zhen Li et al.   Soft Matter

Margination of micro- and nano-particles in blood flow and its effect on drug delivery

(2014) Kathrin Müller et al.   Scientific Reports

Particle dynamics modeling methods for colloid suspensions

(2014) Dan S. Bolintineanu et al.   Computational Particle Mechanics

Perspective on the Martini model

(2013) Siewert J. Marrink et al.   CHEMICAL SOCIETY REVIEWS

Inertial coupling method for particles in an incompressible fluctuating fluid

(2013) Florencio Balboa Usabiaga et al.   COMPUTER METHODS IN APPLIED MECHANICS AND ENGINEERING

Recent advances in Many Body Dissipative Particles Dynamics simulations of liquid-vapor interfaces

(2013) Aziz Ghoufi et al.   EUROPEAN PHYSICAL JOURNAL E

Microscopic derivation of particle-based coarse-grained dynamics

(2013) Sergei Izvekov   JOURNAL OF CHEMICAL PHYSICS

Multiscale modeling with smoothed dissipative particle dynamics

(2013) Pandurang M. Kulkarni et al.   JOURNAL OF CHEMICAL PHYSICS

Screening properties of Gaussian electrolyte models, with application to dissipative particle dynamics

(2013) Patrick B. Warren et al.   JOURNAL OF CHEMICAL PHYSICS

Predicting the thermodynamics by using state-dependent interactions

(2013) Giuseppe D'Adamo et al.   JOURNAL OF CHEMICAL PHYSICS

Perspective: Coarse-grained models for biomolecular systems

(2013) W. G. Noid   JOURNAL OF CHEMICAL PHYSICS

A stochastic finite element model for the dynamics of globular macromolecules

(2013) Robin C. Oliver et al.   JOURNAL OF COMPUTATIONAL PHYSICS

A smooth dissipative particle dynamics method for domains with arbitrary-geometry solid boundaries

(2013) Nikolaos A. Gatsonis et al.   JOURNAL OF COMPUTATIONAL PHYSICS

Prediction of the Critical Micelle Concentration of Nonionic Surfactants by Dissipative Particle Dynamics Simulations

(2013) Aleksey Vishnyakov et al.   Journal of Physical Chemistry Letters

Physically based wall boundary condition for dissipative particle dynamics

(2013) Aryan Mehboudi et al.   Microfluidics and Nanofluidics

Bottom-up construction of interaction models of non-Markovian dissipative particle dynamics

(2013) Yuta Yoshimoto et al.   PHYSICAL REVIEW E

No-go theorem in many-body dissipative particle dynamics

(2013) Patrick B. Warren   PHYSICAL REVIEW E

The power of coarse graining in biomolecular simulations

(2013) Helgi I. Ingólfsson et al.   Wiley Interdisciplinary Reviews-Computational Molecular Science

Dissipative particle dynamics investigation of microencapsulated thermal energy storage phase change materials

(2012) Zhonghao Rao et al.   ENERGY

How to impose stick boundary conditions in coarse-grained hydrodynamics of Brownian colloids and semi-flexible fiber rheology

(2012) Robert D. Groot   JOURNAL OF CHEMICAL PHYSICS

Fluctuating hydrodynamics for multiscale modeling and simulation: Energy and heat transfer in molecular fluids

(2012) Barry Z. Shang et al.   JOURNAL OF CHEMICAL PHYSICS

Multiscale Modeling Approach toward the Prediction of Viscoelastic Properties of Polymers

(2012) G. Maurel et al.   Journal of Chemical Theory and Computation

Multiscale modeling of particle in suspension with smoothed dissipative particle dynamics

(2012) Xin Bian et al.   PHYSICS OF FLUIDS

Consistent Temperature Coupling with Thermal Fluctuations of Smooth Particle Hydrodynamics and Molecular Dynamics

(2012) Georg C. Ganzenmüller et al.   PLoS One

Continuum- and particle-based modeling of shapes and dynamics of red blood cells in health and disease

(2012) Xuejin Li et al.   Soft Matter

Systematic coarse-graining methods for soft matter simulations – a review

(2012) Emiliano Brini et al.   Soft Matter

Mesoscopic simulations of shock-to-detonation transition in reactive liquid high explosive

(2011) J. B. Maillet et al.   EPL

Dissipative particle dynamics at isothermal, isobaric, isoenergetic, and isoenthalpic conditions using Shardlow-like splitting algorithms

(2011) Martin Lísal et al.   JOURNAL OF CHEMICAL PHYSICS

Coarse-graining Brownian motion: From particles to a discrete diffusion equation

(2011) J. A. de la Torre et al.   JOURNAL OF CHEMICAL PHYSICS

Bottom-up coarse-graining of a simple graphene model: The blob picture

(2011) David Kauzlarić et al.   JOURNAL OF CHEMICAL PHYSICS

Linear and non-linear dynamics of entangled linear polymer melts by modified tunable coarse-grained level Dissipative Particle Dynamics

(2011) Mikio Yamanoi et al.   JOURNAL OF CHEMICAL PHYSICS

Semi-bottom-up coarse graining of water based on microscopic simulations

(2011) Lianghui Gao et al.   JOURNAL OF CHEMICAL PHYSICS

Many-body dissipative particle dynamics simulation of liquid/vapor and liquid/solid interactions

(2011) Marco Arienti et al.   JOURNAL OF CHEMICAL PHYSICS

Time-dependent and outflow boundary conditions for Dissipative Particle Dynamics

(2011) Huan Lei et al.   JOURNAL OF COMPUTATIONAL PHYSICS

Energy Conservative Dissipative Particle Dynamics Simulation of Natural Convection in Liquids

(2011) Eiyad Abu-Nada   JOURNAL OF HEAT TRANSFER-TRANSACTIONS OF THE ASME

Numerical simulation of tethered DNA in shear flow

(2011) S Litvinov et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Systematic coarse-graining of the dynamics of entangled polymer melts: the road from chemistry to rheology

(2011) J T Padding et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Three Routes to the Friction Matrix and Their Application to the Coarse-Graining of Atomic Lattices

(2011) David Kauzlarić et al.   MACROMOLECULAR THEORY AND SIMULATIONS

Forced Convection Heat Transfer Simulation Using Dissipative Particle Dynamics

(2011) Toru Yamada et al.   NUMERICAL HEAT TRANSFER PART A-APPLICATIONS

Nanoparticle Brownian motion and hydrodynamic interactions in the presence of flow fields

(2011) B. Uma et al.   PHYSICS OF FLUIDS

Predicting human blood viscosity in silico

(2011) D. A. Fedosov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Smoothed Particle Hydrodynamics (SPH): an Overview and Recent Developments

(2010) M. B. Liu et al.   ARCHIVES OF COMPUTATIONAL METHODS IN ENGINEERING

Aggregate Structure in Heavy Crude Oil: Using a Dissipative Particle Dynamics Based Mesoscale Platform

(2010) Sheng-Fei Zhang et al.   ENERGY & FUELS

Coarse-Graining of Chain Models in Dissipative Particle Dynamics Simulations†

(2010) Justin R. Spaeth et al.   INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH

Microscopic derivation of discrete hydrodynamics

(2010) Pep Español et al.   JOURNAL OF CHEMICAL PHYSICS

Dynamic simulations of colloids by core-modified dissipative particle dynamics

(2010) Martin Whittle et al.   JOURNAL OF CHEMICAL PHYSICS

A splitting scheme for highly dissipative smoothed particle dynamics

(2010) S. Litvinov et al.   JOURNAL OF COMPUTATIONAL PHYSICS

On the Investigation of Coarse-Grained Models for Water: Balancing Computational Efficiency and the Retention of Structural Properties

(2010) Kevin R. Hadley et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Dissipative particle dynamics simulation of circular and elliptical particles motion in 2D laminar shear flow

(2010) Nenad Filipovic et al.   Microfluidics and Nanofluidics

Atomistic methods in fluid simulation

(2010) K. Kadau et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

Recent advances in the modelling and simulation of electrokinetic effects: bridging the gap between atomistic and macroscopic descriptions

(2010) I. Pagonabarraga et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Publisher's Note: Direct construction of mesoscopic models from microscopic simulations [Phys. Rev. E81, 026704 (2010)]

(2010) Huan Lei et al.   PHYSICAL REVIEW E

Calculation of the surface tension from multibody dissipative particle dynamics and Monte Carlo methods

(2010) A. Ghoufi et al.   PHYSICAL REVIEW E

Velocity and stress autocorrelation decay in isothermal dissipative particle dynamics

(2010) Anuj Chaudhri et al.   PHYSICAL REVIEW E

On the accuracy of finite-volume schemes for fluctuating hydrodynamics

(2010) Aleksandar Donev et al.   Communications in Applied Mathematics and Computational Science

DISSIPATIVE PARTICLE DYNAMICS IN SOFT MATTER AND POLYMERIC APPLICATIONS — A REVIEW

(2010) E. MOEENDARBARY et al.   International Journal of Applied Mechanics

On the microscopic foundation of dissipative particle dynamics

(2009) A. Eriksson et al.   EPL

Mori–Zwanzig formalism as a practical computational tool

(2009) Carmen Hijón et al.   FARADAY DISCUSSIONS

On the definition of discrete hydrodynamic variables

(2009) Pep Español et al.   JOURNAL OF CHEMICAL PHYSICS

A phase-field approach to no-slip boundary conditions in dissipative particle dynamics and other particle models for fluid flow in geometrically complex confined systems

(2009) Zhijie Xu et al.   JOURNAL OF CHEMICAL PHYSICS

Consistent scaling of thermal fluctuations in smoothed dissipative particle dynamics

(2009) Adolfo Vázquez-Quesada et al.   JOURNAL OF CHEMICAL PHYSICS

Coarse graining and scaling in dissipative particle dynamics

(2009) Rudolf M. Füchslin et al.   JOURNAL OF CHEMICAL PHYSICS

Bridging fluctuating hydrodynamics and molecular dynamics simulations of fluids

(2009) Nikolaos K. Voulgarakis et al.   JOURNAL OF CHEMICAL PHYSICS

Multicomponent Energy Conserving Dissipative Particle Dynamics: A General Framework for Mesoscopic Heat Transfer Applications

(2009) Anuj Chaudhri et al.   JOURNAL OF HEAT TRANSFER-TRANSACTIONS OF THE ASME

A thermodynamically consistent non-ideal stochastic hard-sphere fluid

(2009) Aleksandar Donev et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

Rheology, Microstructure and Migration in Brownian Colloidal Suspensions

(2009) Wenxiao Pan et al.   LANGMUIR

Simulation of advanced microfluidic systems with dissipative particle dynamics

(2009) Thomas Steiner et al.   Microfluidics and Nanofluidics

CECAM Workshop: ‘Dissipative particle dynamics: addressing deficiencies and establishing new frontiers’ (16–18 July 2008, Lausanne, Switzerland)

(2009) John K. Brennan et al.   MOLECULAR SIMULATION

Smoothed particle hydrodynamic model for viscoelastic fluids with thermal fluctuations

(2009) Adolfo Vázquez-Quesada et al.   PHYSICAL REVIEW E

Hybrid Elastic and Discrete-Particle Approach to Biomembrane Dynamics with Application to the Mobility of Curved Integral Membrane Proteins

(2009) Ali Naji et al.   PHYSICAL REVIEW LETTERS

Dissipative Particle Dynamics and other particle methods for multiphase fluid flow in fractured and porous media

(2009) Paul Meakin et al.   PROGRESS IN COMPUTATIONAL FLUID DYNAMICS

Transient forces in flowing soft matter

(2009) W. J. Briels   Soft Matter

Single-particle hydrodynamics in DPD: A new formulation

(2008) W. Pan et al.   EPL

Insight or illusion? Seeing inside the cell with mesoscopic simulations

(2008) Julian C. Shillcock   HFSP Journal

Mesoscale model parameters from molecular cluster calculations

(2008) Reinier L. C. Akkermans   JOURNAL OF CHEMICAL PHYSICS

Response to “Comment on ‘Markovian approximation in a coarse-grained description of atomic systems’ ” [J. Chem. Phys. 128, 147101 (2008)]

(2008) Carmen Hijón et al.   JOURNAL OF CHEMICAL PHYSICS

Comment on “Markovian approximation in a coarse-grained description of atomic systems” [J. Chem. Phys. 125, 204101 (2006)]

(2008) David Cubero   JOURNAL OF CHEMICAL PHYSICS

A novel algorithm for creating coarse-grained, density dependent implicit solvent models

(2008) Erik C. Allen et al.   JOURNAL OF CHEMICAL PHYSICS

Mesoscopic simulation of entanglements using dissipative particle dynamics: Application to polymer brushes

(2008) Florent Goujon et al.   JOURNAL OF CHEMICAL PHYSICS

Coherent structures in dissipative particle dynamics simulations of the transition to turbulence in compressible shear flows

(2008) Jan-Willem van de Meent et al.   PHYSICAL REVIEW E

Simulations of liquid nanocylinder breakup with dissipative particle dynamics

(2008) A. Tiwari et al.   PHYSICAL REVIEW E

Using force covariance to derive effective stochastic interactions in dissipative particle dynamics

(2008) Anders Eriksson et al.   PHYSICAL REVIEW E

Smoothed dissipative particle dynamics model for polymer molecules in suspension

(2008) Sergey Litvinov et al.   PHYSICAL REVIEW E

Hydrodynamic interactions in dissipative particle dynamics

(2008) Zhigang Li et al.   PHYSICS OF FLUIDS

Transport properties controlled by a thermostat: An extended dissipative particle dynamics thermostat

(2007) Christoph Junghans et al.   Soft Matter