Diverse secondary metabolites are expressed in particle-associated and free-living microorganisms of the permanently anoxic Cariaco Basin
Published 2023 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Diverse secondary metabolites are expressed in particle-associated and free-living microorganisms of the permanently anoxic Cariaco Basin
Authors
Keywords
-
Journal
Nature Communications
Volume 14, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2023-02-07
DOI
10.1038/s41467-023-36026-w
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Compendium of specialized metabolite biosynthetic diversity encoded in bacterial genomes
- (2022) Athina Gavriilidou et al. Nature Microbiology
- Biosynthetic potential of the global ocean microbiome
- (2022) Lucas Paoli et al. NATURE
- Microbial diversity of co-occurring heterotrophs in cultures of marine picocyanobacteria
- (2021) Sean M. Kearney et al. Environmental Microbiome
- Redox-active antibiotics enhance phosphorus bioavailability
- (2021) Darcy L. McRose et al. SCIENCE
- antiSMASH 6.0: improving cluster detection and comparison capabilities
- (2021) Kai Blin et al. NUCLEIC ACIDS RESEARCH
- Mining and unearthing hidden biosynthetic potential
- (2021) Kirstin Scherlach et al. Nature Communications
- ARTS 2.0: feature updates and expansion of the Antibiotic Resistant Target Seeker for comparative genome mining
- (2020) Mehmet Direnç Mungan et al. NUCLEIC ACIDS RESEARCH
- RRE-Finder: a Genome-Mining Tool for Class-Independent RiPP Discovery
- (2020) Alexander M. Kloosterman et al. mSystems
- GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
- (2019) Pierre-Alain Chaumeil et al. BIOINFORMATICS
- Surprise! A hidden B12 cofactor catalyzes a radical methylation
- (2019) Joseph T. Jarrett JOURNAL OF BIOLOGICAL CHEMISTRY
- The manifold roles of microbial ribosomal peptide–based natural products in physiology and ecology
- (2019) Yanyan Li et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- A computational framework to explore large-scale biosynthetic diversity
- (2019) Jorge C. Navarro-Muñoz et al. Nature Chemical Biology
- Charting the Complexity of the Marine Microbiome through Single-Cell Genomics
- (2019) Maria G. Pachiadaki et al. CELL
- Minimap2: pairwise alignment for nucleotide sequences
- (2018) Heng Li BIOINFORMATICS
- MUMmer4: A fast and versatile genome alignment system
- (2018) Guillaume Marçais et al. PLoS Computational Biology
- Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes
- (2018) Tom O. Delmont et al. Nature Microbiology
- Prokaryotic Niche Partitioning Between Suspended and Sinking Marine Particles
- (2018) Manon T Duret et al. Environmental Microbiology Reports
- H2S events in the Peruvian oxygen minimum zone facilitate enhanced dissolved Fe concentrations
- (2018) Christian Schlosser et al. Scientific Reports
- Free-living chemoautotrophic and particle-attached heterotrophic prokaryotes dominate microbial assemblages along a pelagic redox gradient
- (2017) Elizabeth A. Suter et al. ENVIRONMENTAL MICROBIOLOGY
- Patterns of bacterial diversity in the marine planktonic particulate matter continuum
- (2017) Mireia Mestre et al. ISME Journal
- Spatial variability of marine bacterial and archaeal communities along the particulate matter continuum
- (2017) Mireia Mestre et al. MOLECULAR ECOLOGY
- Decline in global oceanic oxygen content during the past five decades
- (2017) Sunke Schmidtko et al. NATURE
- The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery
- (2017) Mohammad Alanjary et al. NUCLEIC ACIDS RESEARCH
- Bacterial Succession on Sinking Particles in the Ocean's Interior
- (2017) Erik A. Pelve et al. Frontiers in Microbiology
- Radical SAM Enzymes in the Biosynthesis of Ribosomally Synthesized and Post-translationally Modified Peptides (RiPPs)
- (2017) Alhosna Benjdia et al. Frontiers in Chemistry
- Comparison of Niskin vs. in situ approaches for analysis of gene expression in deep Mediterranean Sea water samples
- (2016) V.P. Edgcomb et al. DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY
- Near-optimal probabilistic RNA-seq quantification
- (2016) Nicolas L Bray et al. NATURE BIOTECHNOLOGY
- Planctomycetes as Novel Source of Bioactive Molecules
- (2016) Ana P. Graça et al. Frontiers in Microbiology
- Fungal and Prokaryotic Activities in the Marine Subsurface Biosphere at Peru Margin and Canterbury Basin Inferred from RNA-Based Analyses and Microscopy
- (2016) Maria G. Pachiadaki et al. Frontiers in Microbiology
- Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling
- (2015) Cindy J. Castelle et al. CURRENT BIOLOGY
- Unusual non-enzymatic flavin catalysis enhances understanding of flavoenzymes
- (2015) Erick A. Argueta et al. FEBS LETTERS
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- Size-fraction partitioning of community gene transcription and nitrogen metabolism in a marine oxygen minimum zone
- (2015) Sangita Ganesh et al. ISME Journal
- Cycling of suspended particulate phosphorus in the redoxcline of the Cariaco Basin
- (2015) Erin McParland et al. MARINE CHEMISTRY
- Untapped Resources: Biotechnological Potential of Peptides and Secondary Metabolites in Archaea
- (2015) James C. Charlesworth et al. ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL
- Anvi’o: an advanced analysis and visualization platform for ‘omics data
- (2015) A. Murat Eren et al. PeerJ
- MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
- (2015) Dongwan D. Kang et al. PeerJ
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- Interannual and Subdecadal Variability in the Nutrient Geochemistry of the Cariaco Basin
- (2014) Mary Scranton et al. OCEANOGRAPHY
- Dynamic regulation of genome-wide pre-mRNA splicing and stress tolerance by the Sm-like protein LSm5 in Arabidopsis
- (2014) Peng Cui et al. GENOME BIOLOGY
- Natural products: A continuing source of novel drug leads
- (2013) Gordon M. Cragg et al. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS
- Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone
- (2013) Sangita Ganesh et al. ISME Journal
- Identifying producers of antibacterial compounds by screening for antibiotic resistance
- (2013) Maulik N Thaker et al. NATURE BIOTECHNOLOGY
- Mechanism and Catalytic Diversity of Rieske Non-Heme Iron-Dependent Oxygenases
- (2013) Sarah M. Barry et al. ACS Catalysis
- Free-living and aggregate-associated Planctomycetes in the Black Sea
- (2012) Clara A. Fuchsman et al. FEMS MICROBIOLOGY ECOLOGY
- AhpC Is Required for Optimal Production of Enterobactin by Escherichia coli
- (2012) L. Ma et al. JOURNAL OF BACTERIOLOGY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Anammox and denitrification in the oxygen minimum zone of the eastern South Pacific
- (2012) Tage Dalsgaard et al. LIMNOLOGY AND OCEANOGRAPHY
- A genomic approach to the cryptic secondary metabolome of the anaerobic world
- (2012) Anne-Catrin Letzel et al. NATURAL PRODUCT REPORTS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Oceanographic and Biological Effects of Shoaling of the Oxygen Minimum Zone
- (2011) William F. Gilly et al. Annual Review of Marine Science
- The Role of Glutathione S-Transferase GliG in Gliotoxin Biosynthesis in Aspergillus fumigatus
- (2011) Carol Davis et al. CHEMISTRY & BIOLOGY
- Microbial metatranscriptomics in a permanent marine oxygen minimum zone
- (2011) Frank J. Stewart et al. ENVIRONMENTAL MICROBIOLOGY
- Metabolic strategies of free-living and aggregate-associated bacterial communities inferred from biologic and chemical profiles in the Black Sea suboxic zone
- (2011) Clara A. Fuchsman et al. FEMS MICROBIOLOGY ECOLOGY
- Phenazine-1-Carboxylic Acid Promotes Bacterial Biofilm Development via Ferrous Iron Acquisition
- (2011) Y. Wang et al. JOURNAL OF BACTERIOLOGY
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- The expanding role of marine microbes in pharmaceutical development
- (2010) Amanda L Waters et al. CURRENT OPINION IN BIOTECHNOLOGY
- A Cryptic Sulfur Cycle in Oxygen-Minimum-Zone Waters off the Chilean Coast
- (2010) D. E. Canfield et al. SCIENCE
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- A comparative genomics study of genetic products potentially encoding ladderane lipid biosynthesis
- (2009) Jayne E Rattray et al. Biology Direct
- Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria
- (2009) Kevin Penn et al. ISME Journal
- Bacterial competition: surviving and thriving in the microbial jungle
- (2009) Michael E. Hibbing et al. NATURE REVIEWS MICROBIOLOGY
- Triggering cryptic natural product biosynthesis in microorganisms
- (2009) Kirstin Scherlach et al. ORGANIC & BIOMOLECULAR CHEMISTRY
- Unprecedented recent warming of surface temperatures in the eastern tropical Pacific Ocean
- (2008) Jessica L. Conroy et al. Nature Geoscience
- Microbial community gene expression in ocean surface waters
- (2008) J. Frias-Lopez et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started