DNA Origami Fiducial for Accurate 3D Atomic Force Microscopy Imaging

Quantifying epigenetic modulation of nucleosome breathing by high-throughput AFM imaging

(2022) Sebastian F. Konrad et al.   BIOPHYSICAL JOURNAL

AFM Measurements and Tip Characterization of Nanoparticles with Different Shapes

(2022) Roberto Bellotti et al.   Nanomanufacturing and Metrology

Ultra-photostable DNA FluoroCubes: Mechanism of Photostability and Compatibility with FRET and Dark Quenching

(2022) Aaron T. Blanchard et al.   NANO LETTERS

In situ small-angle X-ray scattering reveals strong condensation of DNA origami during silicification

(2022) Martina F. Ober et al.   Nature Communications

AFM characterization of cellulose nanocrystal height and width using internal calibration standards

(2021) Maohui Chen et al.   CELLULOSE

Advancing Biophysics Using DNA Origami

(2021) Wouter Engelen et al.   Annual Review of Biophysics

Base-pair resolution analysis of the effect of supercoiling on DNA flexibility and major groove recognition by triplex-forming oligonucleotides

(2021) Alice L. B. Pyne et al.   Nature Communications

Localization atomic force microscopy

(2021) George R. Heath et al.   NATURE

A 6-nm ultra-photostable DNA FluoroCube for fluorescence imaging

(2020) Stefan Niekamp et al.   NATURE METHODS

Single-Molecule AFM Study of DNA Damage by 1O2 Generated from Photoexcited C60

(2020) Ankita Ray et al.   Journal of Physical Chemistry Letters

Self‐Regeneration and Self‐Healing in DNA Origami Nanostructures

(2020) Jürgen Michael Scheckenbach et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

The free energy landscape of retroviral integration

(2019) Willem Vanderlinden et al.   Nature Communications

A Programmable DNA Origami Platform for Organizing Intrinsically Disordered Nucleoporins within Nanopore Confinement

(2018) Patrick D. Ellis Fisher et al.   ACS Nano

Orthogonal Probing of Single-Molecule Heterogeneity by Correlative Fluorescence and Force Microscopy

(2018) Wout Frederickx et al.   ACS Nano

AFM-based probing of flexibility and surface-attachment of immobilized DNA origami

(2018) Sophie Thamm et al.   LANGMUIR

Free Energy Landscape and Dynamics of Supercoiled DNA by High-Speed Atomic Force Microscopy

(2018) Tine Brouns et al.   ACS Nano

DNA-Origami-Templated Silica Growth by Sol-Gel Chemistry

(2018) Linh Nguyen et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

DNA origami structures as calibration standards for nanometrology

(2017) Virpi Korpelainen et al.   MEASUREMENT SCIENCE and TECHNOLOGY

PREPARATION OF BOVINE SERUM ALBUMIN MONOMER FOR CONJUGATION EXPERIMENTS BY USING DIFFERENT TYPES OF CHROMATOGRAPHY MEDIA

(2017) Jadwiga Pietkiewicz et al.   JOURNAL OF LIQUID CHROMATOGRAPHY & RELATED TECHNOLOGIES

DNA nanotechnology and fluorescence applications

(2016) Thomas Schlichthaerle et al.   CURRENT OPINION IN BIOTECHNOLOGY

Conformational Changes and Flexibility of DNA Devices Observed by Small-Angle X-ray Scattering

(2016) Linda K. Bruetzel et al.   NANO LETTERS

Shape and Interhelical Spacing of DNA Origami Nanostructures Studied by Small-Angle X-ray Scattering

(2016) Stefan Fischer et al.   NANO LETTERS

Molecular force spectroscopy with a DNA origami–based nanoscopic force clamp

(2016) Philipp C. Nickels et al.   SCIENCE

Controlled tip wear on high roughness surfaces yields gradual broadening and rounding of cantilever tips

(2016) Daan Vorselen et al.   Scientific Reports

Understanding Nucleic Acid–Ion Interactions

(2014) Jan Lipfert et al.   Annual Review of Biochemistry

Fluorescence Microscopy with 6 nm Resolution on DNA Origami

(2014) Mario Raab et al.   CHEMPHYSCHEM

Structure, mechanics, and binding mode heterogeneity of LEDGF/p75–DNA nucleoprotein complexes revealed by scanning force microscopy

(2014) Willem Vanderlinden et al.   Nanoscale

DNA origami–based standards for quantitative fluorescence microscopy

(2014) Jürgen J Schmied et al.   Nature Protocols

Single-Molecule Reconstruction of Oligonucleotide Secondary Structure by Atomic Force Microscopy

(2014) Alice Pyne et al.   Small

High-Speed AFM and Applications to Biomolecular Systems

(2013) Toshio Ando et al.   Annual Review of Biophysics

AFM volumetric methods for the characterization of proteins and nucleic acids

(2013) Maria Eugenia Fuentes-Perez et al.   METHODS

Using DNA as a Fiducial Marker To Study SMC Complex Interactions with the Atomic Force Microscope

(2012) M.E. Fuentes-Perez et al.   BIOPHYSICAL JOURNAL

Cryo-EM structure of a 3D DNA-origami object

(2012) X.-c. Bai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Correcting for AFM tip induced topography convolutions in protein–DNA samples

(2012) A.T. Winzer et al.   ULTRAMICROSCOPY

Single-Molecule Analysis Using DNA Origami

(2011) Arivazhagan Rajendran et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Tobacco mosaic virus as an AFM tip calibrator

(2011) Minh-Hieu Trinh et al.   JOURNAL OF MOLECULAR RECOGNITION

Nanomechanical DNA origami 'single-molecule beacons' directly imaged by atomic force microscopy

(2011) Akinori Kuzuya et al.   Nature Communications

Knitting complex weaves with DNA origami

(2010) William M Shih et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

DNA Origami as a Nanoscopic Ruler for Super-Resolution Microscopy

(2009) Christian Steinhauer et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Multilayer DNA Origami Packed on a Square Lattice

(2009) Yonggang Ke et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Self-assembly of DNA into nanoscale three-dimensional shapes

(2009) Shawn M. Douglas et al.   NATURE

Reconstruction of atomic force microscopy image by using nanofabricated tip characterizer toward the actual sample surface topography

(2009) Mingsheng Xu et al.   REVIEW OF SCIENTIFIC INSTRUMENTS

DNA Origami Design of Dolphin-Shaped Structures with Flexible Tails

(2008) Ebbe S. Andersen et al.   ACS Nano

Isothermal Assembly of DNA Origami Structures Using Denaturing Agents

(2008) Ralf Jungmann et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Atomic force microscopy as a multifunctional molecular toolbox in nanobiotechnology

(2008) Daniel J. Müller et al.   Nature Nanotechnology