Development and Evaluation of High-Density SNP Arrays for the Eastern Oyster Crassostrea virginica

Mantle Transcriptome Provides Insights into Biomineralization and Growth Regulation in the Eastern Oyster (Crassostrea virginica)

(2022) Dan Zeng et al.   MARINE BIOTECHNOLOGY

Comparing oyster population structure and disease prevalence between a disease‐resistant and transplanted wild population in Barnegat Bay, NJ ( USA )

(2022) Christine M. Thompson et al.   RESTORATION ECOLOGY

Regulation of the Cell Cycle, Apoptosis, and Proline Accumulation Plays an Important Role in the Stress Response of the Eastern Oyster Crassostrea Virginica

(2022) Cui Li et al.   Frontiers in Marine Science

Development of a multiplex qPCR for the quantification of three protozoan parasites of the eastern oyster Crassostrea virginica

(2022) JL Piesz et al.   DISEASES OF AQUATIC ORGANISMS

Genetic parameters for Crassostrea virginica and their application to family-based breeding in the mid-Atlantic, USA

(2021) Standish K. Allen et al.   AQUACULTURE

Twelve years of SAMtools and BCFtools

(2021) Petr Danecek et al.   GigaScience

Extensive genome-wide duplications in the eastern oyster ( Crassostrea virginica )

(2021) Tejashree H. Modak et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Sticky problems: extraction of nucleic acids from molluscs

(2021) Coen M. Adema   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genetic divergence of selected and wild populations of Pacific oysters (Crassostrea gigas) on the West Coast of North America

(2020) Dennis Hedgecock et al.   AQUACULTURE

Multiple drivers of interannual oyster settlement and recruitment in the lower Chesapeake Bay

(2019) Brendan Turley et al.   CONSERVATION GENETICS

The Effect of Neutral Recombination Variation on Genome Scans for Selection

(2019) Katie E. Lotterhos   G3-Genes Genomes Genetics

OUP accepted manuscript

(2018)   BIOINFORMATICS

Development of SNP Panels as a New Tool to Assess the Genetic Diversity, Population Structure, and Parentage Analysis of the Eastern Oyster (Crassostrea virginica)

(2018) Wilawan Thongda et al.   MARINE BIOTECHNOLOGY

Accelerating crop genetic gains with genomic selection

(2018) Kai Peter Voss-Fels et al.   THEORETICAL AND APPLIED GENETICS

Development of a Medium Density Combined-Species SNP Array for Pacific and European Oysters ( Crassostrea gigas and Ostrea edulis )

(2017) Alejandro P. Gutierrez et al.   G3-Genes Genomes Genetics

Construction and evaluation of a high-density SNP array for the Pacific oyster (Crassostrea gigas)

(2017) Haigang Qi et al.   PLoS One

Performance of selectively-bred lines of eastern oyster, Crassostrea virginica , across eastern US estuaries

(2016) Dina A. Proestou et al.   AQUACULTURE

Genetic load in marine animals: a review

(2016) Louis V. Plough   Current Zoology

Genetic inviability is a major driver of type III survivorship in experimental families of a highly fecund marine bivalve

(2016) L. V. Plough et al.   MOLECULAR ECOLOGY

Infectious diseases of marine molluscs and host responses as revealed by genomic tools

(2016) Ximing Guo et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genetic load in marine animals: a review

(2016) Louis V. Plough   Current Zoology

Developing tools for the study of molluscan immunity: The sequencing of the genome of the eastern oyster, Crassostrea virginica

(2015) Marta Gómez-Chiarri et al.   FISH & SHELLFISH IMMUNOLOGY

Transcriptome analysis reveals strong and complex antiviral response in a mollusc

(2015) Yan He et al.   FISH & SHELLFISH IMMUNOLOGY

Robust Inference of Population Structure for Ancestry Prediction and Correction of Stratification in the Presence of Relatedness

(2015) Matthew P. Conomos et al.   GENETIC EPIDEMIOLOGY

Development and evaluation of the first high-throughput SNP array for common carp (Cyprinus carpio)

(2014) Jian Xu et al.   BMC GENOMICS

Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar)

(2014) Ross D Houston et al.   BMC GENOMICS

A powerful tool for genome analysis in maize: development and evaluation of the high density 600 k SNP genotyping array

(2014) Sandra Unterseer et al.   BMC GENOMICS

Transcriptomic analysis of candidate osmoregulatory genes in the eastern oyster Crassostrea virginica

(2014) Laura E Eierman et al.   BMC GENOMICS

Breeding and Domestication of Eastern Oyster (Crassostrea virginica) Lines for Culture in the Mid-Atlantic, Usa: Line Development and Mass Selection for Disease Resistance

(2014) Anu Frank-Lawale et al.   JOURNAL OF SHELLFISH RESEARCH

The development and characterization of a 57K single nucleotide polymorphism array for rainbow trout

(2014) Y. Palti et al.   Molecular Ecology Resources

dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms

(2014) Jonathan B. Puritz et al.   PeerJ

The advantages and limitations of trait analysis with GWAS: a review

(2013) Arthur Korte et al.   Plant Methods

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

Economic Valuation of Ecosystem Services Provided by Oyster Reefs

(2012) Jonathan H. Grabowski et al.   BIOSCIENCE

Mutation in promoter region of a serine protease inhibitor confers Perkinsus marinus resistance in the eastern oyster (Crassostrea virginica)

(2012) Yan He et al.   FISH & SHELLFISH IMMUNOLOGY

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Oyster Reefs at Risk and Recommendations for Conservation, Restoration, and Management

(2011) Michael W. Beck et al.   BIOSCIENCE

Polymorphism in a serine protease inhibitor gene and its association with disease resistance in the eastern oyster (Crassostrea virginica Gmelin)

(2011) Haiyang Yu et al.   FISH & SHELLFISH IMMUNOLOGY

Quantitative Trait Locus Analysis of Stage-Specific Inbreeding Depression in the Pacific OysterCrassostrea gigas

(2011) Louis V. Plough et al.   GENETICS

A 16-microsatellite multiplex assay for parentage assignment in the eastern oyster (Crassostrea virginica Gmelin)

(2010) Yan Wang et al.   AQUACULTURE

Development and validation of single nucleotide polymorphism markers in the eastern oyster Crassostrea virginica Gmelin by mining ESTs and resequencing

(2010) Liusuo Zhang et al.   AQUACULTURE

Robust relationship inference in genome-wide association studies

(2010) Ani Manichaikul et al.   BIOINFORMATICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Identification and Characterization of 66 EST-SSR Markers in the Eastern OysterCrassostrea virginica(Gmelin)

(2009) Yongping Wang et al.   JOURNAL OF SHELLFISH RESEARCH