Unveiling the Role of Dynamic Alternative Splicing Modulation After Infestation with Sea Lice (Caligus rogercresseyi) in Atlantic Salmon

Identification of Alternative Splicing Events Associated with Paratuberculosis in Dairy Cattle Using Multi-Tissue RNA Sequencing Data

(2022) Houcheng Li et al.   Genes

Alternative Splicing and Isoforms: From Mechanisms to Diseases

(2022) Qi Liu et al.   Genes

The Role of KH-Type Splicing Regulatory Protein (KSRP) for Immune Functions and Tumorigenesis

(2022) Kim-Alicia Palzer et al.   Cells

Global tissue transcriptomic analysis to improve genome annotation and unravel skin pigmentation in goldfish

(2021) Wu Gan et al.   Scientific Reports

Noncanonical functions of the serine‐arginine‐rich splicing factor (SR) family of proteins in development and disease

(2021) Rebecca E. Wagner et al.   BIOESSAYS

Alternative Splicing of Pre-mRNA in the Control of Immune Activity

(2021) Zhongjing Su et al.   Genes

Computational comparison of common event-based differential splicing tools: practical considerations for laboratory researchers

(2021) Ittai B. Muller et al.   BMC BIOINFORMATICS

Principles and Methods of Counteracting Harmful Salmon–Arthropod Interactions in Salmon Farming: Addressing Possibilities, Limitations, and Future Options

(2021) Prashanna Guragain et al.   Frontiers in Marine Science

The Emerging Roles of Endoplasmic Reticulum Stress in Balancing Immunity and Tolerance in Health and Diseases: Mechanisms and Opportunities

(2020) Anqi Li et al.   Frontiers in Immunology

Caligus elongatus and other sea lice of the genus Caligus as parasites of farmed salmonids: A review

(2020) Willy Hemmingsen et al.   AQUACULTURE

Transcriptomic Profiling in Fins of Atlantic Salmon Parasitized with Sea Lice: Evidence for an Early Imbalance Between Chalimus-Induced Immunomodulation and the Host’s Defense Response

(2020) Navaneethaiyer Umasuthan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genome-Wide Characterization of Alternative Splicing Events and Their Responses to Cold Stress in Tilapia

(2020) Bi Jun Li et al.   Frontiers in Genetics

Schistocephalus parasite infection alters sticklebacks’ movement ability and thereby shapes social interactions

(2020) Jolle W. Jolles et al.   Scientific Reports

Exon skipping-rich transcriptomes of animals reflect the significance of exon-shuffling in metazoan proteome evolution

(2019) Laszlo Patthy   Biology Direct

RNA Splicing: A New Paradigm in Host–Pathogen Interactions

(2019) Komal Chauhan et al.   JOURNAL OF MOLECULAR BIOLOGY

Post-transcriptional regulation through alternative splicing after infection with Flavobacterium columnare in channel catfish (Ictalurus punctatus)

(2019) Suxu Tan et al.   FISH & SHELLFISH IMMUNOLOGY

Impact of sea lice (Caligus rogercresseyi) infection levels on skin transcriptome in Atlantic salmon (Salmo salar)

(2019) R. Zindrili et al.   FISH & SHELLFISH IMMUNOLOGY

The Splicing Factor hnRNP M Is a Critical Regulator of Innate Immune Gene Expression in Macrophages

(2019) Kelsi O. West et al.   Cell Reports

Systematic evaluation of differential splicing tools for RNA-seq studies

(2019) Arfa Mehmood et al.   BRIEFINGS IN BIOINFORMATICS

Increased Alternative Splicing as a Host Response to Edwardsiella ictaluri Infection in Catfish

(2018) Suxu Tan et al.   MARINE BIOTECHNOLOGY

Uncovering the Role of RNA-Binding Proteins in Gene Expression in the Immune System

(2018) Manuel D. Díaz-Muñoz et al.   Frontiers in Immunology

Alternative Splicing in Innate Antiviral Immunity

(2018) Ram Savan   JOURNAL OF INTERFERON AND CYTOKINE RESEARCH

Context-dependent reduction in somatic condition of wild Atlantic salmon infested with sea lice

(2018) R Susdorf et al.   MARINE ECOLOGY PROGRESS SERIES

Gene Expression Response to Sea Lice in Atlantic Salmon Skin: RNA Sequencing Comparison Between Resistant and Susceptible Animals

(2018) Diego Robledo et al.   Frontiers in Genetics

Effects of pharmaceuticals used to treat salmon lice on non-target species: Evidence from a systematic review

(2018) M.A. Urbina et al.   SCIENCE OF THE TOTAL ENVIRONMENT

An atlas of alternative splicing profiles and functional associations reveals new regulatory programs and genes that simultaneously express multiple major isoforms

(2017) Javier Tapial et al.   GENOME RESEARCH

Splicing in immune cells—mechanistic insights and emerging topics

(2017) Annalisa Schaub et al.   INTERNATIONAL IMMUNOLOGY

Alternative Pre-mRNA Splicing in Mammals and Teleost Fish: A Effective Strategy for the Regulation of Immune Responses Against Pathogen Infection

(2017) Ming Chang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Mannose Receptor in Regulation of Helminth-Mediated Host Immunity

(2017) Irma van Die et al.   Frontiers in Immunology

Deciphering Transcriptome and Complex Alternative Splicing Transcripts in Mammary Gland Tissues from Cows Naturally Infected with Staphylococcus aureus Mastitis

(2016) Xiu Ge Wang et al.   PLoS One

PI3K signalling in inflammation

(2015) P.T. Hawkins et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

The Role of Alternative Splicing in the Control of Immune Homeostasis and Cellular Differentiation

(2015) Mehmet Yabas et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Comparative transcriptomics of Atlantic Salmo salar, chum Oncorhynchus keta and pink salmon O. gorbuscha during infections with salmon lice Lepeophtheirus salmonis

(2014) Ben JG Sutherland et al.   BMC GENOMICS

Alternative Splicing in Plant Immunity

(2014) Shengming Yang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Ectoparasitic sea lice (Lepeophtheirus salmonis) affect behavior and brain serotonergic activity in Atlantic salmon (Salmo salar L.): Perspectives on animal welfare

(2014) Øyvind Øverli et al.   PHYSIOLOGY & BEHAVIOR

rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data

(2014) Shihao Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PrimerSeq: Design and Visualization of RT-PCR Primers for Alternative Splicing Using RNA-seq Data

(2014) Collin Tokheim et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Signaling by the Phosphoinositide 3-Kinase Family in Immune Cells

(2013) Klaus Okkenhaug   Annual Review of Immunology

Phenotype gene expression differences between resistant and susceptible salmon families to IPNV

(2013) C. Cofre et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Gene expression analyses of immune responses in Atlantic salmon during early stages of infection by salmon louse (Lepeophtheirus salmonis) revealed bi-phasic responses coinciding with the copepod-chalimus transition

(2011) Tariku Markos Tadiso et al.   BMC GENOMICS

Shuttling SR proteins: more than splicing factors

(2011) Laure Twyffels et al.   FEBS Journal

Autophagy in immunity and inflammation

(2011) Beth Levine et al.   NATURE

Alternative splicing in teleost fish genomes: same-species and cross-species analysis and comparisons

(2010) Jianguo Lu et al.   MOLECULAR GENETICS AND GENOMICS

Immune pathology associated with altered actin cytoskeleton regulation

(2009) Dilki C. Wickramarachchi et al.   AUTOIMMUNITY

The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments

(2009) S. A. Bustin et al.   CLINICAL CHEMISTRY

Physiology and immunology of Lepeophtheirus salmonis infections of salmonids

(2008) Glenn N. Wagner et al.   TRENDS IN PARASITOLOGY