Transcriptome Analysis Revealed Osmoregulation Related Regulatory Networks and Hub Genes in the Gills of Hilsa shad, Tenualosa ilisha, during the Migratory Osmotic Stress

Gill and Liver Transcript Expression Changes Associated With Gill Damage in Atlantic Salmon (Salmo salar)

(2022) Mohamed Emam et al.   Frontiers in Immunology

Ubiquitination-Proteasome System (UPS) and Autophagy Two Main Protein Degradation Machineries in Response to Cell Stress

(2022) Yanan Li et al.   Cells

Transcriptome analysis provides novel insights into the function of PI3K/AKT pathway in maintaining metabolic homeostasis of Chinese perch muscle

(2021) Xin Zhu et al.   Aquaculture Reports

A comparative metabolomics study on anadromous clupeid Tenualosa ilisha for better understanding the influence of habitat on nutritional composition

(2020) Satabdi Ganguly et al.   Metabolomics

Comparative transcriptome profiling of selected osmotic regulatory proteins in the gill during seawater acclimation of chum salmon (Oncorhynchus keta) fry

(2020) Sang Yoon Lee et al.   Scientific Reports

Gill transcriptomes reveal expression changes of genes related with immune and ion transport under salinity stress in silvery pomfret (Pampus argenteus)

(2020) Juan Li et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Broodstock development and captive maturation of hilsa ( Tenualosa ilisha ) in a brackishwater pond‐based system

(2020) Debasis De et al.   JOURNAL OF FISH BIOLOGY

Transcriptomic Analysis of Gill and Kidney from Asian Seabass (Lates calcarifer) Acclimated to Different Salinities Reveals Pathways Involved with Euryhalinity

(2020) Shubha Vij et al.   Genes

Sequence analysis and spatiotemporal developmental distribution of the Cat-1-type transporter slc7a1a in zebrafish (Danio rerio)

(2020) Ståle Ellingsen et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Comparative transcriptome analysis reveals osmotic-regulated genes in the gill of Chinese mitten crab (Eriocheir sinensis)

(2019) Zhigang Yang et al.   PLoS One

Genetic population structure of a highly migratory Hilsa Shad, Tenualosa ilisha, in three river systems, inferred from four mitochondrial genes analysis

(2019) Vindhya Mohindra et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Divergent transcriptomic signatures in response to salinity exposure in two populations of an estuarine fish

(2019) Ken M. Jeffries et al.   Evolutionary Applications

Draft genome assembly of Tenualosa ilisha, Hilsa shad, provides resource for osmoregulation studies

(2019) Vindhya Mohindra et al.   Scientific Reports

Transcriptomic analysis reveals putative osmoregulation mechanisms in the kidney of euryhaline turbot Scophthalmus maximus responded to hypo-saline seawater

(2019) Wenxiao Cui et al.   Journal of Oceanology and Limnology

Transcriptome profiling of the low-salinity stress responses in the gills of the juvenile Pseudopleuronectes yokohamae

(2019) Qianjin Cui et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Transcriptomic analysis of adaptive mechanisms in response to sudden salinity drop in the mud crab, Scylla paramamosain

(2018) Huan Wang et al.   BMC GENOMICS

Comparative length-weight relationship and condition factor of hilsa shad Tenualosa ilisha (Hamilton, 1822) from freshwater, estuarine and marine environments in India

(2018) Sangeeta Mandal, Kuldeep K. Lal, Rajeev K. Singh , Rama Shanker Sah , J. K. Jena , Achal Singh et al.   INDIAN JOURNAL OF FISHERIES

Tissue linkage through adjoining basement membranes: The long and the short term of it

(2018) Daniel P. Keeley et al.   MATRIX BIOLOGY

The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources

(2018) Leyla Ruzicka et al.   NUCLEIC ACIDS RESEARCH

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Transcriptomic imprints of adaptation to fresh water: parallel evolution of osmoregulatory gene expression in the Alewife

(2017) Jonathan P. Velotta et al.   MOLECULAR ECOLOGY

Gene expression plasticity in response to salinity acclimation in threespine stickleback ecotypes from different salinity habitats

(2017) Taylor C. Gibbons et al.   MOLECULAR ECOLOGY

CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features

(2017) Yu-Jian Kang et al.   NUCLEIC ACIDS RESEARCH

Lower Expression of SLC27A1 Enhances Intramuscular Fat Deposition in Chicken via Down-Regulated Fatty Acid Oxidation Mediated by CPT1A

(2017) Fengfang Qiu et al.   Frontiers in Physiology

Spatio-temporal changes of hydro-chemical parameters in the estuarine part of the River Ganges under altered hydrological regime and its impact on biotic communities

(2017) R. K. Manna et al.   AQUATIC ECOSYSTEM HEALTH & MANAGEMENT

RNA-Seq analysis of salinity stress–responsive transcriptome in the liver of spotted sea bass (Lateolabrax maculatus)

(2017) Xiaoyan Zhang et al.   PLoS One

Current status of seawater quality in Digha (India), northwestern coast of the Bay of Bengal

(2016) J.Selvin Pitchaikani et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Reciprocal osmotic challenges reveal mechanisms of divergence in phenotypic plasticity in the killifish Fundulus heteroclitus

(2015) R. S. Brennan et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

cytoHubba: identifying hub objects and sub-networks from complex interactome

(2014) Chia-Hao Chin et al.   BMC Systems Biology

A new model for fish ion regulation: identification of ionocytes in freshwater- and seawater-acclimated medaka (Oryzias latipes)

(2014) Hao-Hsuan Hsu et al.   CELL AND TISSUE RESEARCH

Role of Monocarboxylate Transporters in Drug Delivery to the Brain

(2014) Nisha Vijay et al.   CURRENT PHARMACEUTICAL DESIGN

Chlorogenic Acid Decreases Intestinal Permeability and Increases Expression of Intestinal Tight Junction Proteins in Weaned Rats Challenged with LPS

(2014) Zheng Ruan et al.   PLoS One

Expression of ion transporters in gill mitochondrion-rich cells in Japanese eel acclimated to a wide range of environmental salinity

(2013) Mi Young Seo et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Common functional targets of adaptive micro- and macro-evolutionary divergence in killifish

(2013) Andrew Whitehead et al.   MOLECULAR ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Tight junctions, tight junction proteins and paracellular permeability across the gill epithelium of fishes: A review

(2012) Helen Chasiotis et al.   RESPIRATORY PHYSIOLOGY & NEUROBIOLOGY

Characterization of Tissue-Specific and Developmentally Regulated Alternative Splicing of Exon 64 in theCOL5A1Gene

(2011) Anna L. Mitchell et al.   CONNECTIVE TISSUE RESEARCH

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

(2009) Gabriela Bindea et al.   BIOINFORMATICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Direct multiplexed measurement of gene expression with color-coded probe pairs

(2008) Gary K Geiss et al.   NATURE BIOTECHNOLOGY

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

Adherens and tight junctions: Structure, function and connections to the actin cytoskeleton

(2007) Andrea Hartsock et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES