Suggestion for a new bacteriophage genus for the Klebsiella pneumoniae phage vB_KpnS-Carvaje

A Roadmap for Genome-Based Phage Taxonomy

(2021) Dann Turner et al.   Viruses-Basel

Isolation and characterization of lytic phage TUN1 specific for Klebsiella pneumoniae K64 clinical isolates from Tunisia

(2021) Simone Eckstein et al.   BMC MICROBIOLOGY

Mechanistic Insights into the Capsule-Targeting Depolymerase from a Klebsiella pneumoniae Bacteriophage

(2021) Rhys A. Dunstan et al.   Microbiology Spectrum

Characteristics of a Bacteriophage, vB_Kox_ZX8, Isolated From Clinical Klebsiella oxytoca and Its Therapeutic Effect on Mice Bacteremia

(2021) Ping Li et al.   Frontiers in Microbiology

Exploitation of a Klebsiella Bacteriophage Receptor-Binding Protein as a Superior Biorecognition Molecule

(2021) Catarina L. Nogueira et al.   ACS Infectious Diseases

Population genomics of Klebsiella pneumoniae

(2020) Kelly L. Wyres et al.   NATURE REVIEWS MICROBIOLOGY

Isolation and Characterization of a Novel Phage for Controlling Multidrug-Resistant Klebsiella pneumoniae

(2020) Qin Peng et al.   Microorganisms

Bacteriophages as sources of small non-coding RNA molecules

(2020) Sylwia Bloch et al.   PLASMID

SAPPHIRE: a neural network based classifier for σ70 promoter prediction in Pseudomonas

(2020) Lucas Coppens et al.   BMC BIOINFORMATICS

PHANOTATE: a novel approach to gene identification in phage genomes

(2019) Katelyn McNair et al.   BIOINFORMATICS

Specific detection of viable Salmonella Enteritidis by phage amplification combined with qPCR (PAA-qPCR) in spiked chicken meat samples

(2019) Alejandro Garrido-Maestu et al.   FOOD CONTROL

OrthoVenn2: a web server for whole-genome comparison and annotation of orthologous clusters across multiple species

(2019) Ling Xu et al.   NUCLEIC ACIDS RESEARCH

DNA packaging and genomics of the Salmonella 9NA-like phages

(2019) Chi Zeng et al.   JOURNAL OF VIROLOGY

Genomic analyses of a novel bacteriophage (VB_PmiS-Isfahan) within Siphoviridae family infecting Proteus mirabilis

(2018) Mahsa Yazdi et al.   GENOMICS

Targeting mechanisms of tailed bacteriophages

(2018) Franklin L. Nobrega et al.   NATURE REVIEWS MICROBIOLOGY

Chestnut Honey and Bacteriophage Application to Control Pseudomonas aeruginosa and Escherichia coli Biofilms: Evaluation in an ex vivo Wound Model

(2018) Ana Oliveira et al.   Frontiers in Microbiology

Recent advances in biosensors for diagnosis and detection of sepsis: A comprehensive review

(2018) Sanni Kumar et al.   BIOSENSORS & BIOELECTRONICS

Synergistic Antimicrobial Interaction between Honey and Phage against Escherichia coli Biofilms

(2017) Ana Oliveira et al.   Frontiers in Microbiology

Clinical and economic impact of antibiotic resistance in developing countries: A systematic review and meta-analysis

(2017) Raspail Carrel Founou et al.   PLoS One

Detection of ESKAPE Bacterial Pathogens at the Point of Care Using Isothermal DNA-Based Assays in a Portable Degas-Actuated Microfluidic Diagnostic Assay Platform

(2016) Lars D. Renner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform

(2016) Po-E Li et al.   NUCLEIC ACIDS RESEARCH

Comparative genomics and functional analysis of the 936 group of lactococcal Siphoviridae phages

(2016) James Murphy et al.   Scientific Reports

Characterization of Siphoviridae phage Z and studying its efficacy against multidrug-resistant Klebsiella pneumoniae planktonic cells and biofilm

(2015) M. Jamal et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Phage Therapy: a Step Forward in the Treatment of Pseudomonas aeruginosa Infections

(2015) Diana P. Pires et al.   JOURNAL OF VIROLOGY

FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program: Table 1.

(2015) Vincent Lefort et al.   MOLECULAR BIOLOGY AND EVOLUTION

Revisiting phage therapy: new applications for old resources

(2015) Franklin L. Nobrega et al.   TRENDS IN MICROBIOLOGY

Survey and rapid detection of Klebsiella pneumoniae in clinical samples targeting the rcsA gene in Beijing, China

(2015) Derong Dong et al.   Frontiers in Microbiology

Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy

(2015) Jan P Meier-Kolthoff et al.   Standards in Genomic Sciences

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Systematic Identification of Hypothetical Bacteriophage Proteins Targeting Key Protein Complexes of Pseudomonas aeruginosa

(2014) An Van den Bossche et al.   JOURNAL OF PROTEOME RESEARCH

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

A bacteriophage detection tool for viability assessment of Salmonella cells

(2013) E. Fernandes et al.   BIOSENSORS & BIOELECTRONICS

Genome sequence-based species delimitation with confidence intervals and improved distance functions

(2013) Jan P Meier-Kolthoff et al.   BMC BIOINFORMATICS

Colorimetric Sensor Array Allows Fast Detection and Simultaneous Identification of Sepsis-Causing Bacteria in Spiked Blood Culture

(2013) S. H. Lim et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Isolation of a Bacteriophage Specific for a New Capsular Type of Klebsiella pneumoniae and Characterization of Its Polysaccharide Depolymerase

(2013) Chun-Ru Hsu et al.   PLoS One

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

A Method for Generation Phage Cocktail with Great Therapeutic Potential

(2012) Jingmin Gu et al.   PLoS One

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

(2011) T. Carver et al.   BIOINFORMATICS

Easyfig: a genome comparison visualizer

(2011) M. J. Sullivan et al.   BIOINFORMATICS

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Use of newly isolated phages for control of Pseudomonas aeruginosa PAO1 and ATCC 10145 biofilms

(2011) Diana Pires et al.   RESEARCH IN MICROBIOLOGY

ARNold: A web tool for the prediction of Rho-independent transcription terminators

(2011) Magali Naville et al.   RNA Biology

Bacteriophage tailspike proteins as molecular probes for sensitive and selective bacterial detection

(2010) Amit Singh et al.   BIOSENSORS & BIOELECTRONICS

The in vivo efficacy of two administration routes of a phage cocktail to reduce numbers of Campylobacter coli and Campylobacter jejuni in chickens

(2010) Carla M Carvalho et al.   BMC MICROBIOLOGY

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Molecular Taxonomy of Phytopathogenic Fungi: A Case Study in Peronospora

(2009) Markus Göker et al.   PLoS One

Preventing biofilms of clinically relevant organisms using bacteriophage

(2009) Rodney M. Donlan   TRENDS IN MICROBIOLOGY

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS