BERT-Promoter: An improved sequence-based predictor of DNA promoter using BERT pre-trained model and SHAP feature selection

BERT-GT: Cross-sentence n-ary relation extraction with BERT and graph transformer

(2021) Po-Ting Lai et al.   BIOINFORMATICS

BERT4Bitter: a bidirectional encoder representations from transformers (BERT)-based model for improving the prediction of bitter peptides

(2021) Phasit Charoenkwan et al.   BIOINFORMATICS

A transformer architecture based on BERT and 2D convolutional neural network to identify DNA enhancers from sequence information

(2021) Nguyen Quoc Khanh Le et al.   BRIEFINGS IN BIOINFORMATICS

A sequence-based prediction of Kruppel-like factors proteins using XGBoost and optimized features

(2021) Nguyen Quoc Khanh Le et al.   GENE

Using extreme gradient boosting to identify origin of replication in Saccharomyces cerevisiae via hybrid features

(2020) Duyen Thi Do et al.   GENOMICS

An intelligent computational model for prediction of promoters and their strength via natural language processing

(2020) Muhammad Tahir et al.   CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS

DeePromoter: Robust Promoter Predictor Using Deep Learning

(2019) Mhaned Oubounyt et al.   Frontiers in Genetics

Identification of prokaryotic promoters and their strength by integrating heterogeneous features

(2019) Hilal Tayara et al.   GENOMICS

Classifying Promoters by Interpreting the Hidden Information of DNA Sequences via Deep Learning and Combination of Continuous FastText N-Grams

(2019) Nguyen Quoc Khanh Le et al.   Frontiers in Bioengineering and Biotechnology

iPSW(2L)-PseKNC: A two-layer predictor for identifying promoters and their strength by hybrid features via pseudo K-tuple nucleotide composition

(2018) Xuan Xiao et al.   GENOMICS

Recognition of prokaryotic and eukaryotic promoters using convolutional deep learning neural networks

(2017) Ramzan Kh. Umarov et al.   PLoS One

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond

(2015) Socorro Gama-Castro et al.   NUCLEIC ACIDS RESEARCH

Structural Properties of Gene Promoters Highlight More than Two Phenotypes of Diabetes

(2015) Constantin Ionescu-Tîrgovişte et al.   PLoS One

The role of ATF-2 in oncogenesis

(2008) Spiros A. Vlahopoulos et al.   BIOESSAYS