Statistical evidence for the presence of trajectory in single-cell data

LISA2: Learning Complex Single-Cell Trajectory and Expression Trends

(2021) Yang Chen et al.   Frontiers in Genetics

A comparison of single-cell trajectory inference methods

(2019) Wouter Saelens et al.   NATURE BIOTECHNOLOGY

Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM

(2019) Huidong Chen et al.   Nature Communications

Mapping the Pairwise Choices Leading from Pluripotency to Human Bone, Heart, and Other Mesoderm Cell Types

(2016) Kyle M. Loh et al.   CELL

Dissecting direct reprogramming from fibroblast to neuron using single-cell RNA-seq

(2016) Barbara Treutlein et al.   NATURE

An atlas of transcriptional, chromatin accessibility, and surface marker changes in human mesoderm development

(2016) Pang Wei Koh et al.   Scientific Data

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

(2015) Florian Buettner et al.   NATURE BIOTECHNOLOGY