CircadiOmics: circadian omic web portal

Atlas of exercise metabolism reveals time-dependent signatures of metabolic homeostasis

(2022) Shogo Sato et al.   Cell Metabolism

Large‐scale analysis reveals spatiotemporal circadian patterns of cilia transcriptomes in the primate brain

(2021) Pierre Baldi et al.   JOURNAL OF NEUROSCIENCE RESEARCH

Integration of feeding behavior by the liver circadian clock reveals network dependency of metabolic rhythms

(2021) Carolina M. Greco et al.   Science Advances

Intergenerational trauma transmission is associated with brain metabotranscriptome remodeling and mitochondrial dysfunction

(2021) Sammy Alhassen et al.   Communications Biology

MiR‐29 coordinates age‐dependent plasticity brakes in the adult visual cortex

(2020) Debora Napoli et al.   EMBO REPORTS

Cocaine-mediated circadian reprogramming in the striatum through dopamine D2R and PPARγ activation

(2020) Karen Brami-Cherrier et al.   Nature Communications

S-adenosyl-l-homocysteine hydrolase links methionine metabolism to the circadian clock and chromatin remodeling

(2020) Carolina Magdalen Greco et al.   Science Advances

Time of Exercise Specifies the Impact on Muscle Metabolic Pathways and Systemic Energy Homeostasis

(2019) Shogo Sato et al.   Cell Metabolism

Defining the Independence of the Liver Circadian Clock

(2019) Kevin B. Koronowski et al.   CELL

Distinct metabolic adaptation of liver circadian pathways to acute and chronic patterns of alcohol intake

(2019) Jonathan Gaucher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CircadiOmics: circadian omic web portal

(2018) Nicholas Ceglia et al.   NUCLEIC ACIDS RESEARCH

Atlas of Circadian Metabolism Reveals System-wide Coordination and Communication between Clocks

(2018) Kenneth A. Dyar et al.   CELL

Universal method for robust detection of circadian state from gene expression

(2018) Rosemary Braun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetic regulation of the circadian gene Per1 contributes to age-related changes in hippocampal memory

(2018) Janine L. Kwapis et al.   Nature Communications

CirGRDB: a database for the genome-wide deciphering circadian genes and regulators

(2017) Xianfeng Li et al.   NUCLEIC ACIDS RESEARCH

What time is it? Deep learning approaches for circadian rhythms

(2016) Forest Agostinelli et al.   BIOINFORMATICS

Lung Adenocarcinoma Distally Rewires Hepatic Circadian Homeostasis

(2016) Selma Masri et al.   CELL

Gut microbiota directs PPARγ‐driven reprogramming of the liver circadian clock by nutritional challenge

(2016) Mari Murakami et al.   EMBO REPORTS

ZeitZeiger: supervised learning for high-dimensional data from an oscillatory system

(2016) Jacob J. Hughey et al.   NUCLEIC ACIDS RESEARCH

The pervasiveness and plasticity of circadian oscillations: the coupled circadian-oscillators framework

(2015) Vishal R. Patel et al.   BIOINFORMATICS

Time for Food: The Intimate Interplay between Nutrition, Metabolism, and the Circadian Clock

(2015) Gad Asher et al.   CELL

Partitioning Circadian Transcription by SIRT6 Leads to Segregated Control of Cellular Metabolism

(2014) Selma Masri et al.   CELL

Circadian behavior is light-reprogrammed by plastic DNA methylation

(2014) Abdelhalim Azzi et al.   NATURE NEUROSCIENCE

Circadian rhythm reprogramming during lung inflammation

(2014) Jeffrey A. Haspel et al.   Nature Communications

Reprogramming of the Circadian Clock by Nutritional Challenge

(2013) Kristin L. Eckel-Mahan et al.   CELL

Circadian Disruption Leads to Insulin Resistance and Obesity

(2013) Shu-qun Shi et al.   CURRENT BIOLOGY

Circadian acetylome reveals regulation of mitochondrial metabolic pathways

(2013) Selma Masri et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Circadian clock regulates the host response to Salmonella

(2013) M. M. Bellet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coordination of the transcriptome and metabolome by the circadian clock

(2012) K. L. Eckel-Mahan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals

(2012) N. Koike et al.   SCIENCE

Circadian Rhythms, Aging, and Life Span in Mammals

(2011) Oren Froy   PHYSIOLOGY

The Mammalian Circadian Timing System: Organization and Coordination of Central and Peripheral Clocks

(2010) Charna Dibner et al.   Annual Review of Physiology

Cancer Inhibition through Circadian Reprogramming of Tumor Transcriptome with Meal Timing

(2010) X. M. Li et al.   CANCER RESEARCH

Metabolism and Circadian Rhythms—Implications for Obesity

(2010) Oren Froy   ENDOCRINE REVIEWS

JTK_CYCLE: An Efficient Nonparametric Algorithm for Detecting Rhythmic Components in Genome-Scale Data Sets

(2010) Michael E. Hughes et al.   JOURNAL OF BIOLOGICAL RHYTHMS

Obesity and shift work: chronobiological aspects

(2010) L. C. Antunes et al.   NUTRITION RESEARCH REVIEWS

CLOCK and BMAL1 regulate MyoD and are necessary for maintenance of skeletal muscle phenotype and function

(2010) J. L. Andrews et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolism control by the circadian clock and vice versa

(2009) Kristin Eckel-Mahan et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Harmonics of Circadian Gene Transcription in Mammals

(2009) Michael E. Hughes et al.   PLoS Genetics

Analysis of Gene Regulatory Networks in the Mammalian Circadian Rhythm

(2008) Jun Yan et al.   PLoS Computational Biology