A chromosome-level genome assembly of the pollinating fig wasp Valisia javana

Genomic evidence of prevalent hybridization throughout the evolutionary history of the fig-wasp pollination mutualism

(2021) Gang Wang et al.   Nature Communications

Molecular mechanisms of mutualistic and antagonistic interactions in a plant–pollinator association

(2021) Rong Wang et al.   Nature Ecology & Evolution

Cuticular protein gene LmACP8 is involved in wing morphogenesis in the migratory locust, Locusta migratoria

(2021) Xiao-ming ZHAO et al.   Journal of Integrative Agriculture

Identifying and removing haplotypic duplication in primary genome assemblies

(2020) Dengfeng Guan et al.   BIOINFORMATICS

RepeatModeler2 for automated genomic discovery of transposable element families

(2020) Jullien M. Flynn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes

(2020) T. Rhyker Ranallo-Benavidez et al.   Nature Communications

A chromosome‐level genome assembly of the parasitoid wasp Pteromalus puparum

(2020) Xinhai Ye et al.   Molecular Ecology Resources

Genomes of the Banyan Tree and Pollinator Wasp Provide Insights into Fig-Wasp Coevolution

(2020) Xingtan Zhang et al.   CELL

Rfam 14: expanded coverage of metagenomic, viral and microRNA families

(2020) Ioanna Kalvari et al.   NUCLEIC ACIDS RESEARCH

Multiple parapatric pollinators have radiated across a continental fig tree displaying clinal genetic variation

(2019) Hui Yu et al.   MOLECULAR ECOLOGY

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

NextPolish: a fast and efficient genome polishing tool for long-read assembly

(2019) Jiang Hu et al.   BIOINFORMATICS

The genomic features of parasitism, Polyembryony and immune evasion in the endoparasitic wasp Macrocentrus cingulum

(2018) Chuanlin Yin et al.   BMC GENOMICS

The role of glutathione S-transferases (GSTs) in insecticide resistance in crop pests and disease vectors

(2018) Nena Pavlidi et al.   Current Opinion in Insect Science

Juvenile hormone–dependent Kazal-type serine protease inhibitor Greglin safeguards insect vitellogenesis and egg production

(2018) Wei Guo et al.   FASEB JOURNAL

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

(2018) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

Insights into the venom protein components of Microplitis mediator, an endoparasitoid wasp

(2018) Zhe Lin et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

(2017) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Database resources of the National Center for Biotechnology Information

(2017) et al.   NUCLEIC ACIDS RESEARCH

Phased diploid genome assembly with single-molecule real-time sequencing

(2016) Chen-Shan Chin et al.   NATURE METHODS

Identification of a diazinon-metabolizing glutathione S-transferase in the silkworm, Bombyx mori

(2016) Kohji Yamamoto et al.   Scientific Reports

Dietary and phylogenetic correlates of digestive trypsin activity in insect pests

(2015) Jelica Lazarević et al.   ENTOMOLOGIA EXPERIMENTALIS ET APPLICATA

Lack of genetic isolation by distance, similar genetic structuring but different demographic histories in a fig-pollinating wasp mutualism

(2015) Enwei Tian et al.   MOLECULAR ECOLOGY

Venom Proteins from Parasitoid Wasps and Their Biological Functions

(2015) Sébastien Moreau et al.   Toxins

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

A genetic tool kit for cellular and behavioral analyses of insect sugar receptors

(2015) Ahmet Yavuz et al.   FLY

A Kazal-Type Serine Protease Inhibitor from the Defense Gland Secretion of the Subterranean Termite Coptotermes formosanus Shiraki

(2015) Horia Negulescu et al.   PLoS One

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Evolutionary Diversification of Insect Innexins

(2014) Austin L. Hughes   JOURNAL OF INSECT SCIENCE

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Detection of sweet tastants by a conserved group of insect gustatory receptors

(2014) E. G. Freeman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Relative investment in egg load and poison sac in fig wasps: Implications for physiological mechanisms underlying seed and wasp production in figs

(2013) Ellen O. Martinson et al.   ACTA OECOLOGICA-INTERNATIONAL JOURNAL OF ECOLOGY

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

Delimitation and description of the immature stages of a pollinating fig wasp, Ceratosolen solmsi marchali Mayr (Hymenoptera: Agaonidae)

(2013) Ling-Yi Jia et al.   BULLETIN OF ENTOMOLOGICAL RESEARCH

Structure and Function of Cytochrome P450S in Insect Adaptation to Natural and Synthetic Toxins: Insights Gained from Molecular Modeling

(2013) Mary A. Schuler et al.   JOURNAL OF CHEMICAL ECOLOGY

Ionotropic Glutamate Receptors IR64a and IR8a Form a Functional Odorant Receptor Complex In Vivo in Drosophila

(2013) M. Ai et al.   JOURNAL OF NEUROSCIENCE

Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3

(2013) Mira V. Han et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions

(2013) Jaina Mistry et al.   NUCLEIC ACIDS RESEARCH

Antimicrobial activity of a honeybee (Apis cerana) venom Kazal-type serine protease inhibitor

(2013) Bo Yeon Kim et al.   TOXICON

Obligate mutualism within a host drives the extreme specialization of a fig wasp genome

(2013) Jin-Hua Xiao et al.   GENOME BIOLOGY

Mutualism from the inside: coordinated development of plant and insect in an active pollinating fig wasp

(2012) Sergio Jansen-González et al.   Arthropod-Plant Interactions

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Development of microsatellite loci for Blastophaga javana (Agaonidae), the pollinating wasp of Ficus hirta (Moraceae)

(2011) En-Wei Tian et al.   AMERICAN JOURNAL OF BOTANY

Multiple roles of phosphoinositide-specific phospholipase C isozymes

(2011) Pann-Ghill Suh et al.   BMB Reports

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

(2011) P. Gaudet et al.   BRIEFINGS IN BIOINFORMATICS

Comparative Genomics of the Odorant-Binding and Chemosensory Protein Gene Families across the Arthropoda: Origin and Evolutionary History of the Chemosensory System

(2011) Filipe G. Vieira et al.   Genome Biology and Evolution

Functional Architecture of Olfactory Ionotropic Glutamate Receptors

(2011) Liliane Abuin et al.   NEURON

Floral scents: their roles in nursery pollination mutualisms

(2010) Martine Hossaert-McKey et al.   CHEMOECOLOGY

Insights into the venom composition of the ectoparasitoid waspNasonia vitripennisfrom bioinformatic and proteomic studies

(2010) D. C. de Graaf et al.   INSECT MOLECULAR BIOLOGY

Genome annotation and comparative analyses of the odorant-binding proteins and chemosensory proteins in the pea aphid Acyrthosiphon pisum

(2010) J.-J. Zhou et al.   INSECT MOLECULAR BIOLOGY

Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species

(2010) J. H. Werren et al.   SCIENCE

Venom Proteins of the Parasitoid Wasp Nasonia vitripennis: Recent Discovery of an Untapped Pharmacopee

(2010) Ellen L. Danneels et al.   Toxins

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Variant Ionotropic Glutamate Receptors as Chemosensory Receptors in Drosophila

(2009) Richard Benton et al.   CELL

Controversy and consensus: noncanonical signaling mechanisms in the insect olfactory system

(2009) Takao Nakagawa et al.   CURRENT OPINION IN NEUROBIOLOGY

Can chemical signals, responsible for mutualistic partner encounter, promote the specific exploitation of nursery pollination mutualisms? - The case of figs and fig wasps

(2009) Magali Proffit et al.   ENTOMOLOGIA EXPERIMENTALIS ET APPLICATA

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Molecular evolution of the major chemosensory gene families in insects

(2009) A Sánchez-Gracia et al.   HEREDITY

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcription factor Lmo4 defines the shape of functional areas in developing cortices and regulates sensorimotor control

(2008) Zhenyong Huang et al.   DEVELOPMENTAL BIOLOGY

Insect olfactory receptors are heteromeric ligand-gated ion channels

(2008) Koji Sato et al.   NATURE

Pikachurin, a dystroglycan ligand, is essential for photoreceptor ribbon synapse formation

(2008) Shigeru Sato et al.   NATURE NEUROSCIENCE