Genome analysis of five recently described species of the CUG-Ser clade uncovers Candida theae as a new hybrid lineage with pathogenic potential in the Candida parapsilosis species complex
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Genome analysis of five recently described species of the CUG-Ser clade uncovers Candida theae as a new hybrid lineage with pathogenic potential in the Candida parapsilosis species complex
Authors
Keywords
-
Journal
DNA RESEARCH
Volume 29, Issue 2, Pages -
Publisher
Oxford University Press (OUP)
Online
2022-04-15
DOI
10.1093/dnares/dsac010
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Population genomics of the pathogenic yeast Candida tropicalis identifies hybrid isolates in environmental samples
- (2021) Caoimhe E. O’Brien et al. PLoS Pathogens
- Genome analysis of Candida subhashii reveals its hybrid nature and dual mitochondrial genome conformations
- (2021) Verónica Mixão et al. DNA RESEARCH
- PhylomeDB V5: an expanding repository for genome-wide catalogues of annotated gene phylogenies
- (2021) Diego Fuentes et al. NUCLEIC ACIDS RESEARCH
- Identification of a novel Candida metapsilosis isolate reveals multiple hybridization events
- (2021) Caoimhe E O’Brien et al. G3-Genes Genomes Genetics
- Genomic evidence for a hybrid origin of the yeast opportunistic pathogen Candida albicans
- (2020) Verónica Mixão et al. BMC BIOLOGY
- MetaPhOrs 2.0: integrative, phylogeny-based inference of orthology and paralogy across the tree of life
- (2020) Uciel Chorostecki et al. NUCLEIC ACIDS RESEARCH
- Hybridization and the origin of new yeast lineages
- (2020) Toni Gabaldón FEMS YEAST RESEARCH
- OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes
- (2019) Stephan Greiner et al. NUCLEIC ACIDS RESEARCH
- Whole-Genome Sequencing of the Opportunistic Yeast Pathogen Candida inconspicua Uncovers Its Hybrid Origin
- (2019) Verónica Mixão et al. Frontiers in Genetics
- Genome Assemblies of Two Rare Opportunistic Yeast Pathogens: Diutina rugosa (syn. Candida rugosa) and Trichomonascus ciferrii (syn. Candida ciferrii)
- (2019) Verónica Mixão et al. G3-Genes Genomes Genetics
- nQuire: a statistical framework for ploidy estimation using next generation sequencing
- (2018) Clemens L. Weiß et al. BMC BIOINFORMATICS
- Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
- (2017) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- Hybridization and emergence of virulence in opportunistic human yeast pathogens
- (2017) Verónica Mixão et al. YEAST
- Evolutionary restoration of fertility in an interspecies hybrid yeast, by whole-genome duplication after a failed mating-type switch
- (2017) Raúl A. Ortiz-Merino et al. PLOS BIOLOGY
- Five novel species in the Lodderomyces clade associated with insects
- (2016) Xiao-Jing Liu et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Redundans: an assembly pipeline for highly heterozygous genomes
- (2016) Leszek P. Pryszcz et al. NUCLEIC ACIDS RESEARCH
- Multiple Origins of the Pathogenic Yeast Candida orthopsilosis by Separate Hybridizations between Two Parental Species
- (2016) Markus S. Schröder et al. PLoS Genetics
- NxTrim: optimized trimming of Illumina mate pair reads: Table 1.
- (2015) Jared O’Connell et al. BIOINFORMATICS
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Metabolic gene clusters encoding the enzymes of two branches of the 3-oxoadipate pathway in the pathogenic yeast Candida albicans
- (2015) Gabriela Gérecová et al. FEMS YEAST RESEARCH
- dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes
- (2015) Yana Safonova et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis
- (2015) Leszek P. Pryszcz et al. PLoS Genetics
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Genome Comparison of Candida orthopsilosis Clinical Strains Reveals the Existence of Hybrids between Two Distinct Subspecies
- (2014) Leszek P. Pryszcz et al. Genome Biology and Evolution
- The Candida Pathogenic Species Complex
- (2014) S. A. Turner et al. Cold Spring Harbor Perspectives in Medicine
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
- Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
- (2012) H. Thorvaldsdottir et al. BRIEFINGS IN BIOINFORMATICS
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Mitochondrial genome variability within the Candida parapsilosis species complex
- (2012) Matus Valach et al. MITOCHONDRION
- Sequence and Analysis of the Genome of the Pathogenic Yeast Candida orthopsilosis
- (2012) Alessandro Riccombeni et al. PLoS One
- SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
- (2012) Ruibang Luo et al. GigaScience
- Evolution of Mating within the Candida parapsilosis Species Group
- (2011) Sixiang Sai et al. EUKARYOTIC CELL
- Candida theae sp. nov., a new anamorphic beverage-associated member of the Lodderomyces clade
- (2011) Chin-Feng Chang et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- Gentisate and 3-oxoadipate pathways in the yeast Candida parapsilosis: identification and functional analysis of the genes coding for 3-hydroxybenzoate 6-hydroxylase and 4-hydroxybenzoate 1-hydroxylase
- (2011) Z. Holesova et al. MICROBIOLOGY-SGM
- Evolution of linear chromosomes and multipartite genomes in yeast mitochondria
- (2011) Matus Valach et al. NUCLEIC ACIDS RESEARCH
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Results from the ARTEMIS DISK Global Antifungal Surveillance Study, 1997 to 2007: a 10.5-Year Analysis of Susceptibilities of Candida Species to Fluconazole and Voriconazole as Determined by CLSI Standardized Disk Diffusion
- (2010) M. A. Pfaller et al. JOURNAL OF CLINICAL MICROBIOLOGY
- The mitochondrial genome of the pathogenic yeast Candida subhashii: GC-rich linear DNA with a protein covalently attached to the 5' termini
- (2010) D. Fricova et al. MICROBIOLOGY-SGM
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Telomeric circles: universal players in telomere maintenance?
- (2009) Lubomir Tomaska et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Four novel Candida species in the Candida albicans/Lodderomyces elongisporus clade isolated from the gut of flower beetles
- (2008) Zhao-Hui Ji et al. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- Preparation of yeast mitochondrial DNA for direct sequence analysis
- (2008) Matus Valach et al. CURRENT GENETICS
- Large-scale assignment of orthology: back to phylogenetics?
- (2008) Toni Gabaldón GENOME BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started